HsaINT0187442 @ hg38
Intron Retention
Gene
ENSG00000168813 | ZNF507
Description
zinc finger protein 507 [Source:HGNC Symbol;Acc:HGNC:23783]
Coordinates
chr19:32345625-32347338:+
Coord C1 exon
chr19:32345625-32345783
Coord A exon
chr19:32345784-32347244
Coord C2 exon
chr19:32347245-32347338
Length
1461 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCG
5' ss Score
10.05
3' ss Seq
ACTTTCGTTCTTGGCCACAGCTG
3' ss Score
8.55
Exon sequences
Seq C1 exon
AGCGCCGCCATTTTGGAGCTCCGGATGAGGAGGGGGAAACCGGGGGAAAAGAGGGAAAAGAGCCGGGAGAGAGGTGGGCAAGGACGAGGGCGAGGGCACGGCCGGGTCCTGGCTGGCCAAACGAGGCTCGCGGAAGCAGCAGCCGCCGCCTGACCGCAG
Seq A exon
GTACCGCGCCCCGGGGCCGCCCCTCCGCCCGCTGTTAGCGCCGCCGCCGGCCATGTGCATCCTCCCCTCAGGCCTCTGCCGGCGCTCGCTTCCTCCTCAGCCGGCCGACCCCCGCCCGGTGCTAGCCACAAGCCCCAAGTTCCGTGTCCCGGTTCTGTCTTCTGTGCAGCAAGGCCTGCGGAGACTCTGGGCTTGCCCTGCAGCTGGGGGTGGGGGGAACTTGCTGCTCCCTGCATACTGTCACCAGCCCGGCCCGCCCGCAGGCGTTGCTTCCTTCTCCAGGCGTTGCTTCTTTCTGCAAATGTGAGATCGCTTAGGCCAGCCGGGATGGACCCAGCCACGATGTTCTCACAGCATCTTTTGATTAATTTTCTAAGCTCCCTCATTCCCGACCCATCACCTCAGTCCTTTAGCCAGTGCGTGGTGTAGAAAAAGCTACTACAGAAACGCAGCCCTGGTCTTCTGCATTTATTACCATCCTCTGGAGATAGAATGATGTCTCCAGAGATCACGGAGACCATCAGGGAAAGTTCCCACCTCTTAAGACCTGGGGGCATCGGAATGAATGGTTTGTGTAGAAGGCCGGGATGATTAATAAGGTGGCGGCCACTTTCCCAACCCCAAGGCGGTATTTTTAAGTTTCTGCAGTGGGCTGTAATTTGCTATCAGTCTGCATCGCTCTTCTCAGGCAATTACTGGATTTATCACCTCTTTGAGTTTGCACTTTCTCCAGTACTCCCCTCTCACTCAGAGTATGGGTTGCATTATTGATTAAAAGAAAGCCTGGCCCTTCATTCCTTTACCTCACTAACTCGTTGAAAATTAACTTCAGGGGAGCCCTAAAGATGTTTTTTCTGCCCTGGCAGTGAGCTATTTTACTTAACCGTAATCGATAAGGTAGTTGCATTCTAGGTGAAACGAATAAGCATTTTTTTATCTTTTAGATTTATTCCAGCCAGTATAAGAAACAGTGGCAAAGAAATGTAGGACCAGAGTAGGAAACTGCGTTAGAAGATATATAGGTCACACCACTGTGTCATATCTTTTTATGCTGTTTTTCTGCCTATTGTGCTTGGTTGCAGAATCACTCGTTAGATTGTATTTTTAGTTTAGATTAAAATAGCAATGTGCAATTTATTGTTCCATTCTCATTAGAAAATGTTGTCAGTAAAACCAATAGTGTTGAGTCCAGTACCTAAATTCTGAGGTAAAACAAAATACACAATTATTGGGAGAAGTTTCCAGAGCTATTTTTTCCTAACTTCTGCAAAATCCTCAAGTCGGCTTGTTAGATAAATTATTTAAATTTGCATTACGTAATAGGGTTGCATGAACATTCCTCTGAATTTCTTTTTACATGGAATATTGAGAAATTTTTCACTGCCAAAAAAAAAATCATTACTTTGTTTCACCAAGAAAGAGAAATGTTTTGATACTATATACTTTCGTTCTTGGCCACAG
Seq C2 exon
CTGGATTTTGAAGATTGATCCAAGGGACTGTATTAATTTCAGGAATTGATTTGAAAGACACTGGCTCTGCCACTTAACAGCCATGTAACCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168813:ENST00000587084:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATTTTGGAGCTCCGGATGA
R:
CCAAGGTTACATGGCTGTTAAGTG
Band lengths:
246-1707
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains