RnoINT0168290 @ rn6
Intron Retention
Gene
ENSRNOG00000013565 | Zfp507
Description
zinc finger protein 507 [Source:RGD Symbol;Acc:1307017]
Coordinates
chr1:92118421-92119951:-
Coord C1 exon
chr1:92119807-92119951
Coord A exon
chr1:92118512-92119806
Coord C2 exon
chr1:92118421-92118511
Length
1295 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCG
5' ss Score
10.05
3' ss Seq
ACTTTCCTTCTTGGCCACAGCTG
3' ss Score
8.28
Exon sequences
Seq C1 exon
CTTGGAGCCACGGCCGAGGAGGGGGCAAAAAGGGGAAAAGAGAGGGAAAAGAGTCGGGAGCGAGGCGGACGAGGGTAAGGGGACGGCGGGGTCCCGGCCAGCCAAAGGAGGCTCGCAGAAGCGGCAGCCCGCCGCCCTACCGCAG
Seq A exon
GTACCGCGCCCCGGGCCACCCCTCCGCTTGAGCGCCGCCGGCCATGTGCGGCCTCGCCGGTGACGCCCGCTTCCTCCTCGCCGGTGACGCCCGCGGCACTGCCACGCACCGGAGCGCCAGGGTCCTGTGTGTACTGTCGTCCCTCTGCTAGGCCTATGGAGACCCCGGGCCTGCGGTGCCGCTGGGGGTGGGGGTCCCGCTGCTCCTCAGGCCCCGCTGTTGCCTTCTGGAGACGTGAAATCGCTTAGGCCAGCCAGGATGGAGCTTAAGTTTCTTTAATCCCCTGTTTTTTAAGCACTGCGTGGTGTAGGAAATGCCAGTTGAAAAGCAAAATAGCAATCCTGGCCTCCCACACTTACACATCCTCTGGGATGACTGATCTTTCCAGAGATCGCTGAGACCATTTGTGAAAGTGCCCACCTTTCCAGACCTGGGACATCCCGGTCGTTTGTTTTGGAGTCCGTGGCCTGGGTGATAAATTAGGTCCAGGCAGCCACCCCCACCCAAGGTTGCTGACAGTGAACTGGAATTTGCTATCAGTCTACATGGCCCAAGGCAATTACTGGATTTGTCACCTTTTCTGTCAGAGTTTGTACTTTCTACTCTACCGGTCTGATTCTATGTATGGATTGCTATATTGATTAAAAAGAGAAAGTTTGACCCTTCATTTCTTTACCATGGTAACTCGTTAGAAATTAACACTGAAGGATGCTCTAGCTGTGTACTAATTTTACTTAACTATTGCTAAGTTACTTTCTAAGGAAACTAAGTAAGTCTACTTTAAAACAACTATCGGAAAATAGTAGGGAAAAAAAAATGGAGGACCAGGGCAGGAAACTGCTTTGGAGAATATATAGGTCAAGCCACGTTGTCGGATCTTTTCATGGTACTATTCTGCCCACTGTGTTTGACTAATTTACATAATCACCCCTTAGGCTGTAATTTCGGTTAAAGTTAGAATAGCAATATGTCATTTATTATTCCATATTGGTTAGAAAATTATGTCAGTTAAACCCGTAGTTTGCTGAGTGAATTACTTACAAGGAGGGGAAGGCTTAAAATATACAATTGTTAGATTTCCAGACTGATTTGTTTTAGCTTCTGCAAAATCCTCTACTTGTTAAGTAAATTATGTAAATTTGCCTCACACAATTACATTGCATGAACAGCCTTCCGAAATTTCTTTTCAATTTAAGTATGGGAAGTTTCTTCACCGACAAAATAAGTTATTGTTGTGTTTTACCCACCACAAAAGAGACGCGTTTGATGATGTTTACTTTCCTTCTTGGCCACAG
Seq C2 exon
CTGGATTGTGAATATTGATCCAGGAGACTATCAATTTCAGAAATTGATTGGAAAGACACTGGCTCTGCCACTAACAGCCATGTAACCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013565:ENSRNOT00000018153:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGGAGGGGGCAAAAAGG
R:
CCAAGGTTACATGGCTGTTAGTG
Band lengths:
222-1517
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]