MmuINT0179478 @ mm9
Intron Retention
Gene
ENSMUSG00000066721 | Zfp575
Description
zinc finger protein 575 [Source:MGI Symbol;Acc:MGI:2141921]
Coordinates
chr7:25372177-25372660:-
Coord C1 exon
chr7:25372470-25372660
Coord A exon
chr7:25372262-25372469
Coord C2 exon
chr7:25372177-25372261
Length
208 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CCTTTCGTCTTTTTCTCCAGGTT
3' ss Score
12.18
Exon sequences
Seq C1 exon
GGATGGGAGGAGGGGATGGAAGTGAAGCTGGGCCCTACGGCTCGGCAATCTCCTTCCCGCTCTTCTCTCCTCCAACGGCGTCCCAGCGCCCGCTGGGAGGTGCAGGTCCGAGGGCTACAAGGTAGCTCACGAGGCTTAATTGAGACGGGAGGGTTCCGGAGCCCCACCCCCGGGGAGGGACCGCCCTGCAG
Seq A exon
GTGAGAAGGGCTGGGTCCTGGTCTCCTGGAGATGGATTGGGGGCTGGCCGCTAGGATCTCTCCGCGAAGGGTAGATATGGATCTCGGTGCTCTGGTTTTTGAGGAGTGCATGCGATGCCAGACGTTTGGGACTCCCTCCATGAAAGTCTATATTCTGGGTCTCTAGGTGGTTCTATAAGCCACACCTTCCTTTCGTCTTTTTCTCCAG
Seq C2 exon
GTTTCCCTAATTCTCTGAGTCCCCAGTTCTATGCCAGAGATGCGATTTAGCGACACAGCATCAGTAGGCTGAGACTAAAGACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066721-Zfp575:NM_001033205:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGGGAGGAGGGGATGGAA
R:
CCTGTCTTTAGTCTCAGCCTACTG
Band lengths:
276-484
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: