BtaINT0165745 @ bosTau6
Intron Retention
Gene
ENSBTAG00000030939 | ZNF575
Description
zinc finger protein 575 [Source:RefSeq peptide;Acc:NP_001035593]
Coordinates
chr18:52072770-52073732:+
Coord C1 exon
chr18:52072770-52072813
Coord A exon
chr18:52072814-52073620
Coord C2 exon
chr18:52073621-52073732
Length
807 bp
Sequences
Splice sites
5' ss Seq
AGGGAGGGG
5' ss Score
-5.98
3' ss Seq
TCGCCCCCTCTCCCGGCTAGGTC
3' ss Score
9.07
Exon sequences
Seq C1 exon
TGGCCACGGCCGCCGAGGGAGGGGCCCGGAGCCCCGCCCCCAGG
Seq A exon
GAGGGGCCGTCCTCAGGTGAGGGGGCAGGGGTTCGGACCCAGACACCTGGGTCTCGGGAAATGGAGTGGGGCCTGCACGCCACAGTTCCCGGAGAAGGACCCATTGGGGTCCTGATGCATAGGTTCCGGAGGGGCTGCATTGCCCCCTGAGCCTTGGGAGGTTACATTGATGCCCGAATGCCATGATCCCAAGGGGTGCGTGAAGGCTCGGACGCTTGCGACCTCGAGGGAGAAGTCCATTATGGGTCTCTGGATCGCAACACACGAGCCACGCTCTTTCTGTGTCTTTCTCCAGGTCTCCCCTCTCCTCTCCACGTCTCCAGCTCCACTCCGTGGTTGAAAGGCAGTGAACGCGGCGTCAATGGACTGAGACTGAGCCAAGAGCCGGGTAAAGCTACCTATTGGGTGTGTATTACCGCACACTGAGCTTGTAGGCCCCTCCCCTGGGACAGAGTTGCTGAGCAACCGACTTCGGGTCTTAATTGTATAACTCCACCCATCCGCGGCCGGTCCCGCCCACCTGGGCTTAAGCCCCGCCTGCTCCGCGCCCGGGGCGGCTGGGAGTTAAAGTTGTAGAGGCCCCACCCACTCCGCCGGAAGGCTCAATCTCGGGGTCTAGGTTCCAGACTGCTTCTGGGTCGGGTTTGCGTAACCCCGCCCACTGCGCCCTTAGGCTCCACCCACCCTCGCCTTCTAGGACCTGACGTGATAGCCCCTGCTCCTGAACAAACTAACCCCTGAATATGGGCTCTCAGTCCTATCCCCAACAGCCTGATAACCCCCGGCGTCGCCCCCTCTCCCGGCTAG
Seq C2 exon
GTCCTCCCTCTAGGTTTCTGGGCCAGCAGGATGCTGGAGCGAGAGACGGAGTCTGCGGCCGGGGGCGCCGAGCCTAGTCCCACTGACAAGGAGCCTGTGATCAAAAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030939:ENSBTAT00000043790:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.947
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development