RnoINT0168406 @ rn6
Intron Retention
Gene
ENSRNOG00000024065 | Zfp575
Description
zinc finger protein 575 [Source:RGD Symbol;Acc:1305025]
Coordinates
chr1:81449627-81450094:-
Coord C1 exon
chr1:81449927-81450094
Coord A exon
chr1:81449731-81449926
Coord C2 exon
chr1:81449627-81449730
Length
196 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CCTTTCGTCTTTTTCTCCAGGTT
3' ss Score
12.18
Exon sequences
Seq C1 exon
GTGAAGCTGGGCCCCAAGGCTCGGCAAGCTCCTTCCCGCTCTTCTCTCCTCCAGCGACGTCCCAGCGCCCGCTGGGAGTGCAGGTCGGAGGGCTACAAGGTAGCTCCTGAGGCTTAACTGAGACGGGAGGGTTCCGGAGCCCCACCCCCGGGAGGGACCGCCCTGCAG
Seq A exon
GTGAGAAGGGCTGGGTCCTGGTCTCCTGGAGATGGCTTGGGGGCTGGACGCCAGGATCCCACCGTGAAGGGTACATATGGGTCCCGGTGCCCTGGTTTTTGAGGAGTGCATGCGATGCCAGACATTTCGGACTCCCTTCAGTGAAAGTCCCTAGATCGTTCTATACACCACACCTTCCTTTCGTCTTTTTCTCCAG
Seq C2 exon
GTTTCCCTAATCCTCCGAGCTCCCCAATTCTATGCCAGAGATGCGATTTAGCGACCAGAAGGACAGGGTGGACACAGCATCAGTAGGCTGAGACTAAAGACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024065:ENSRNOT00000035356:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAGCTGGGCCCCAAG
R:
GCCTACTGATGCTGTGTCCAC
Band lengths:
256-452
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]