HsaINT0187718 @ hg19
Intron Retention
Gene
ENSG00000176472 | ZNF575
Description
zinc finger protein 575 [Source:HGNC Symbol;Acc:27606]
Coordinates
chr19:44037340-44038054:+
Coord C1 exon
chr19:44037340-44037673
Coord A exon
chr19:44037674-44037946
Coord C2 exon
chr19:44037947-44038054
Length
273 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CCTTCCGTATCTTCCTCCAGGTC
3' ss Score
12.43
Exon sequences
Seq C1 exon
AGCTTCGCGCTTGCTCACGAACTTGCCTGCCTGGCTGGCGCACCCAGCCCCTCCTTCCATTCCTTCTTCCCCCTCTCTGCAGCCTCTGCCAGCCCGCACTGCGCATGCTTTCTGACGCCCCCTTTGGTCCAGCGTGGGAGGAGGGGATGGAAATGAGGTTGGGCTAAGCAGCTTGCGCGCGCTCCCTTGCCTGCCCTCCCCCGACGCCGGACGCGCGCCGGGCGGGGCAGCTCCGCTGGTCCGAGGGCAGTGCAGCAGCGGCGACAGCGGCTGCGGCCGTGGCCGTGGCGGGAGGAGCCGGAAGCCCCGCCCCCGGGGAGGGGCCGTCCTGCAG
Seq A exon
GTGAGGGCGCAGGGGTTCGGGCGCGGATATTGGCTTGCAGGCTGAATGCCAGAATCACCCCGAGGGAGATCGGTTGTGGTCCGGACGCCTAGATTCTGGAGATGCTGGAGGGACTGTGCATTGGTGCCAGAGCCTCGGGAGGGTGCATCGGTGCCTGAATGTCTGATTCCGAGGGGTGCATTGAATCCTTTACGCTTGGGACTCTGAGGGAAAAGTCCATTAGGGGTCTCTGGACCGCGACGCATGCCAGGTTCCTTCCGTATCTTCCTCCAG
Seq C2 exon
GTCCCCCCTCTATCCTCCACGGCCCCATCCAAGCCAGGGATGAAATTTAACGGCAAGAAGGGCGCAGTTGACGCGGCGTCAATGAACTGAGACTAAGTCAAAAGCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176472-ZNF575:NM_174945:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGGAGGGGATGGAAATGA
R:
AGTCTCAGTTCATTGACGCCG
Band lengths:
293-566
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)