MmuINT0179640 @ mm9
Intron Retention
Gene
ENSMUSG00000049739 | Zfp646
Description
zinc finger protein 646 [Source:MGI Symbol;Acc:MGI:3665412]
Coordinates
chr7:135022084-135029510:+
Coord C1 exon
chr7:135022084-135027432
Coord A exon
chr7:135027433-135028956
Coord C2 exon
chr7:135028957-135029510
Length
1524 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TCCTCTCCTTCTCTCCGCAGGAG
3' ss Score
13.72
Exon sequences
Seq C1 exon
GCCTCAGCCCTTCTGCAGAGAGAATGCTGCTGCCACCTGTCTGTCCCTCCTGAGCCTCCAGGGGTTTTCTACCGCTTTGCCTCATGGAGGACATGCCCCTCTCATTCAGTTGCTCTGACTGTCAGCGCCACTTTCCTAACCTCCCAGAACTGGCACGGCATCGAGAACTGCGCCATTCATCTGCTAAGCAGGACGGGGAGGAAGCCGATGGCATCCCTCACCCCTATGGCAGTCACCCGGAGAACTTGGCCAACCATCAGAGGAACCATGAGACTCTTTTTTTCCCCTGTACCACCTGTGGCAAGGATTTTTCTAATCGCTTGGCCCTCCAGAGCCATATGAGGACTCATGCTCCTGAGAGCCACCGAAGGCACGGGCCTCCACATGCCATGGAAACCGCTCCACACCTTGGGAGTGAGACCATGGCTACTGACTCCTGGGGTCAGAGGCTTGGATCTGGGGAAGGCTGGGAAAATCAGACGAAGTTGGTACGAGAGACACATGACTGGGAATCTGGAGCTGACCCCAGGGCAGCGTCAGGGACGTGGGAAGATCCACCTACCAAACAAAGACAAGGCTTAGAAATGCAGCCAGATTCTAAAGGAGGTACGGCGGACTGGGTGCCCGCCGTCAGTTCCGAAGGAGCATCACCACTCCCCACTCCAGCGAGCAACCTTCTTAGCAATTTGGAACAGTATTTGGCTGAATCAGTAGTGAACTTCACAGAGGCCCAGGAGCCCACTGAGCCTCTTCCTACTGAGGGGGAGCGAAAGTACAGGTGCAGTGAGTGCGGGAAGACCTATAAGCATGCCGGGAGCCTCACCAACCACCGCCAGAGTCACACTCTGGGCATCTACCCTTGTTCCATCTGTTTCAAGGAGTTCTCTAACCTCATGGCCCTGAAGAACCACTCGAGACTCCATGCCCAGTATCGGCCTTACCACTGTCCTCACTGCCCCCGTGCCTTTCGGCTCCCCAGGGATCTGCTGGAACATCAGCAGTCCCATGAGGGGCTAAAGCAGGAACAACCATGGGAAGACAAAGAGATGCCTACCACAAATGGACACGCAGATGAGAGGAGTTGGGGTCAGCTATCTAAAACAGGGATGTTGAATGGTTCTGGGGAGCTCAGCTCTTCTGGACAGCTAGAAGATGGCGGCTCAGAGGAATATCGACCTTTCTGTTGTGGAGACTGTGGCCGTACCTACCGTCATGCAGGTAGTCTCATCAACCATCGAAAAAGCCACCAAACAGGTATCTACCCCTGTTCCATTTGTTCCAAGCAGCTATTCAATGCAGCTGCTCTGAAAAACCATATTCGTGCTCATCATAGACCCCGGCAAGGAGCTGGGGAAGGTGGTCAGTCATCAGTGTCCTCAACTGCTCTTACGTCAGCCGAGAATACTCCAAAAGTGGACGAGGTCCCCACTGCCAGCCTGGACCATCGTCCCTATAAGTGTAATGAGTGTGGTCGGGCTTACCGCCACAGAGGGAGCCTGGTGAACCACCGCCACAGCCACCGGACAGGAGAGTACCAGTGTTCACTTTGTCCTCGAAAATACCCCAACCTTATGGCTCTGCGCAACCATGTGCGGGTACATTGCAAGGCTACACGCCGAAGTACAGATCCAGGGACTGAAGGTTCACCCAGCCCTGTCAAGAAAGAACAACATGATCCAGTGGGAATGGAAGCAGCATTCCACGGAGATGAGGAACATGCATGCAAACGTGAAGAAGAGGCCACCAGTAACCCCTCAATGGCAGATAGGACAGTGCCACAGGTGTGTAGCATTTGTGGAATGTTGTTTGAAGATCTCAAAAGTCTCGAACATCATAGCGTGACCCACAGGGAAGGAGAAAAAAGCAGGACAGACAGCACGGTGTCACCAACTAGAACATTTGCTTGCCAAGACTGTGGCAAGAGCTATCGCCACTCAGGCAGCCTTATTAACCATAGGCAGACCCATCAGACAGGAGACTTCAGTTGTGGGGCCTGTGCCAAGCATTTCCATACCATGGCTGCGATGAAAAGCCATTTACGGCGTCACAGTCGGCAGTGGAACAGAAGGCGGCAGAAGCAAGATAGTGGTACAGGGGAAGTAGCCACGCTCCCACCTGGGGGCGCCTGGACCCTGAAGCTGGAAAACGACGAGGACCCAGATTCTTCCCAAGATCCTTTGGGAGAAAGTCCTTGTGAAACTGAAGACAACCTGGAAAGGGATGGGGACTGTTTGCAGGCTGGATCTAGAGGCAACGAATGTGTGCTTAAAAGGGAGGAAGCCTGTTTTCTGGGTGATAAAGAGGGCACTGAGGAAGGACTAGAAGAGAGAGAGGCCTGTTTCCTTGACGACCTAGGCACCCCAGGTGATGAGTGCAATGAAACTGGCTTCTGTGGTGGCCTCCCTGGGATGGACAGTGACCGGAAGAGGGGCATCTGCCACTCTGACTCCTCCTCCCACCCTGCTGACGCTGACACTGTCTGGAAGGCCGCAGCCACTCACACCTGTTCTGACTGTGGAGATTCTTTCTCCCATGCTGCTGGCCTGTTGAGCCATAGGTCCTGCCACCCTCCAGGCATCTATCAATGCTCTCTCTGTCCAAAGGAATTTGATTCTCTGCCTGCCCTTCGAAGTCACTTCCAGACCCATCGGCCAGGAGAGGTAGCCTCAGCACAGCCCTTCCTCTGCTGCCTGTGCGGTATGATCTTTCCTGGGAGGACTGGCTACAGGCGTCATCTGCGCCAGGCTCATGGAGCTTCTGCCATGACTGAGGGCTCAGAAGAAGAGGAGGAAGGCACAGCAGAAACAGCCTCTACCCATAGTCCTCCCCTGCAACTCTCAGAAGCAGAGCTGCTGAATCAACTGCAGCGTGAGGTGGAAGCTCTAGATGGAGCAGGTTATGGTCATATTTGTGGTTGCTGTGGTCAGACCTATGATGACCTGGGGAGCCTGGAGCGTCACCACCAAAGTCAAAGTTCTAGCAATAGGACAGAGAATGTTCCTAGCCATTTGGAAGGAGCAGGTGATGCAACAGAAATGGTTGCAGATCATGGCTTTGAGGGCACAGTGACCTCCGTCTCAGAAGAAGGTGGGGACATAAAGTCTGAAGAGGGAGTAGGTGGCACAGTTGCAGACAGCCTTTGCATGCAGGCTGGTGAAAGCTTTCTGGAGTCCCACCCTCGCCCTTTCCAATGTAACCAGTGTGGCAAGACCTATCGCCACGGAGGCAGCTTGGTAAACCACCGAAAGATCCACCAGACAGGTGATTTCATCTGTCCTGTCTGTTCCCGCTGCTACCCCAATCTGGCTGCCTACCGGAATCATCTGCGGAATCACCCTCGCTGCAAAGGCTCAGAGCCCCAAATGGGGCCCATCTCAGAAGCAGGAGGCTGCAGTGAGCCCCAGAATGCAGCAGAGGCAGGGCAGGAGCAGGCTGTCATAGGGCAACTCCAGGAAGAGCTTAAAGTGGAGCCCTTGGAGGAGCTGGCAGGTGTCAAAGAAGAAGTGTGGGAGGGGACCGCTGTAAAGGAAGAGGAGCTGGAGCAGGAGTTGGAGACAGGCTGTCAGACTGAGGTCACCTCGGAGCGGCCCTTTAGCTGTGAAGTGTGTGGCCGCACCTACAAGCATGCTGGCAGCCTTATCAATCACCGGCAGAGCCACCAGACTGGCCACTTTGGCTGCCAGGCCTGCTCCAAGGGTTTCTCAAACCTCATGTCACTCAAGAACCACCGGCGCATCCATGCAGACCCTCGACAGTTCCGCTGCAGTGAGTGTGGGAAAGCCTTTCGCCTGCGAAAGCAGCTGGCCAACCACCAGCGAGTCCATGCTGAGCGACGCAGGAGTAGGGGCACCCAGAAACTGACTCGTGAGGACCGGCCTTTCAGATGTGGGCAGTGTGGCCGGACTTACCGCCATGCTGGCAGTCTCATGAACCACCAGTGCAACCCTGAGGCCAGCCGTTACAGCTGCCCTTTCTGTTTTAAGACCTATTCCAACCGCACAGCCCTGAAAGACCATCAGAGGGTACATTCTGATAGTCAACAGCGGCGACAGTCAGGATGTCCCCAGAGGGCAGCAGCTGTACGTTGTACCCTATGTGGCTGTGGCTTTTCTGGCCAGGGATCTCTAGAGCAGCATCTACAGGAGCATGAGGACACCAAACTAGAGGTAGCCAGTGGCCAGGGAGGCCAACATGCTACAGAAGGCAGTGAGGAGAACCTTGATGACTGGGGACTGGAGGGCAGGTCAGATGGTACTGAGGTACTGCAGGTGGAACATGAAACCAAGAGGCCTGGGGGACACAGTCAGAGTCCCAGTAGCCCAGCGTGTTCAGGAGGCACAGAATCCACACAGCAGGTGGGGAAAGTAGATGGGAGTCAAGGAGACAGAGGACAAATGAACCACAATGGTGCCTGGGTTCTTCAGGATCAGTTAACCAAGCCAGAAGGCAAGTTGGAAGACACTGTCTCCAGGAATCCTTGTCACCTCTCTGAGAGCCAGTCCAATGGTCCTACTCTAAGATACAGGGATAGTTGGAAAGGTGCTGACAGCGGCTCTCAACTCCAACCAGAAAGCCACTGCTGCAGCCAGTGTGGCAAGGCCTACTGCCAACCTGATGGCCTCTTGAACCCCAGCATTAATGGGAAAGACTGTCACATTTGTCTGCTCTGTTCCAAAGAGTTCTTGAATCCTGTGACCACTGAGATCCACAACCACACTACTGCCCAGCGCTTTGCTTGTAGTAATTGTAGCAAAGTGTGTGAGTCCCACAGTGAACTGGCCACACACATGAAGACTCATGCTGTTGAGCACAGTCAGATGTCAGGTCAGATGGAGAAGACCAGAGGTCCACAGGCTGGGATGGCAGAGGTGGGTCCTCCTGGTCCAGGGAAAGCTCAGGAGGCCCCATCAGAACTTCCTGGAGACCCAGAGGAGAATGGGGTGCCAGCTAACGGAGGACAAGGAATACATTTCCCAGCAGCTGAAGACAAGGAGCGTCCCTTTTGCTGTGCTCAGTGTGGGCGTTCATACCGCCATGCCGGTAGCCTGCTGAACCACCAGAAGGCCCACACCATTGGACTCTACCCCTGTTCCCTGTGTCCCAAACTTCTGCCTAACCTGCTGTCTCTCAAGAACCACAGTCGGACCCACACGGACCCCAAGCGCTACAGCTGCAACATCTGTGGCAAGGCTTTCAGAACCGCTGCCCGGCTTCAGGGCCATGGACGGGTCCATGCACCCCAGGAGGGACCATTCACCTGTTCTCATTGTCCTCGCCGCTTCCGCCACCGAATCAGCTTTCTGCGACACCAGCAGCAGCACCAGGAAGAGTGGCCAGTGTCGAGCTCAG
Seq A exon
GTATGTGGTTGGGCAGAGGATTGAGAGGATCCAGGAGGAGGTGGGCACAGAGGAGAGAAAGCATGGCCCGGAGTAGGTAAGGGAAGCAAGCAGAAAAGAGAGTCAAGTGGAGCCTGAGGGGCAGGAGGCCTGGACATGGACTGACCATCTAGCTTGAAAGGCCTGACTGCCTTTGAGCCACTGAGGTGTGAATCTGGTGTGAGTCAGGGAGATGGGTGCTGGGGTAGGTTGGGCAGCGGTGTGAACTCTTATATAACCAAGGAGGAATGGCTGTTTTCTTTCAGTGAGCATCTGAGAATCTTGATTTAGTCAGTGACAGTTTCCAGAGGAAAAGGGTGGAACCCTGGGCCTTGTTTAGGTTCTGGTCTTCCCTAGAGTTGGCAAGAAGCCAGGGACTAAGGAGAAAGGTGAAGGATTGCCAACTCCTGGGTTGTCATACAGATAGTTAGTGGTCTGCAGGTCCAAGGCAGAGGCGGGCTCTCCTGCTCAGTTGGTGACTTCTAACTGCACACTCTATGGCTTTACTGCTGACTTAGCTGTGTGCTGGGTCACTGGCCAATGCTCATTCTTCTGTCTCCTCCCCCTATAGTTTGTCTCTGACTTTTTTCTTTTTCTTTTTTTTCTTTTTTCTAAGATTTATTTATTATTATATCTAAGTACACCATAGCTGTCTTCAGACACACCGGAAGAGGGCATCAGATCTCATTACTGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCAGAAGAGCAGTCAGTGCTCTTAACCGCTGAGCCATCTCTGCAGCCCCCTCTGCCTTTTTTTCTTGAAAATGATGCCTCTGTGAGTGCTGCACTACATCTTTGTGTTCGTTCTTTTAGTTAATCTTATCCTCCTTCTGCTACAGATCTTATAGGAGCTAACCAAACTACTCTCTCTGCCAGCATTTCCCCCACACACCCCTTTTAACTGAAGGATTGACTCACAGATAATTGTTTCTTTGAAGCCAGGCCCAGTTGAGCAGCCACAGTCATTAGTTCCTATCTCTCATCCTCTATCACTGTGAATCTCTGGTAAGCTGGTCTCCACCCAGCCCGCAGAAGGGTAAGGATGTGGAGGCATGGGGCTGTAAGCTCATCTTCCACATCTAGAGAGAAAACTGTTCCATCTACAGCCACCAAGGGTGATGTCCCTGAAATGGTATGCCCTTGCCCAGAGCTTGACTGGGAAGGACAGGATAGTGGTGATGGTTCCTGAGAACTGTAACTTCAGGTACAATGAGCCAGGGGCCTGTTAGCCAAGGCTGCAAACCTAACTGGGAGTTCTAGGACTCCTGGGCTTGGTTGGTTTGGTGAGGGAAAGATGCTGGGCACGGTGAGACCTGGGGCCTCACACACAGGACGCAAAGGCTTGAATGCTTATCCATCTATTCAGTCAGCCTCTTGTCCTTCTCTCTCAGGCCAGGGATGGCCTGCAGGGCTGAGAGGTGGTGTAGGCCTCCCTCAGTGTCCTCTCCTTCTCTCCGCAG
Seq C2 exon
GAGCCTCAGTGGCACCAGCAGCAAGCAGAGAGGATTCCTCTACAGCCTCGCTTCCGAACCCCTCACCCCAGTGGCCTGCAGACCTCAGTCTCTCCCTCTGAATGACAGGTCTCCAAAGAACAGTTGACTGAAGGATGGGGCAGGCAGGGAGAGGCTTGCTCTCCTCATTTTGCTCAGGAGTTGCTTGGGCATCCCCATCTCCTCTTCCCACGAAGAGGACCCTAATCTGGCTTTTTCCCCCAAGAAGGGCATGAGGTAGTCTTCATGTCTGTGCCCATGAAGGATGAAGGATCTCCTTCCCAACCCTTTGTCACCATGATTTTCCAGGGCCAGACTCTGCCAAAATGCAGAGAGAGCCAGATTCTCACCCAGGGAGAGGCAGATCAGAGAGAACCACTGGTGCGAAAGCTGCCTGTGACAGGGGAGCCTTTTACTATAGTTTGTAACTTATTTTCTAAAATCTATTTTGTAACAATTTAAGTTTTAAAAAAGGAAATTGCTCCCCAAACCCCCCACCCCCAAGGAAAAAAAAAACAACTTTTTTTTTCACAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049739-Zfp646:NM_172749:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.517 A=NA C2=0.879
Domain overlap (PFAM):
C1:
PF0009621=zf-C2H2=WD(100=1.4),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF138941=zf-C2H2_4=WD(100=1.4),PF0009621=zf-C2H2=WD(100=1.3),PF138941=zf-C2H2_4=WD(100=1.4),PF0009621=zf-C2H2=WD(100=1.3),PF121713=zf-C2H2_jaz=WD(100=1.3),PF139121=zf-C2H2_6=WD(100=1.5),PF138941=zf-C2H2_4=WD(100=1.4),PF138941=zf-C2H2_4=WD(100=1.4),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF138941=zf-C2H2_4=WD(100=1.4),PF128742=zf-met=WD(100=1.2),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF134651=zf-H2C2_2=WD(100=1.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGCAAGGCTTTCAGAACC
R:
CCCAAGCAACTCCTGAGCAAA
Band lengths:
358-1882
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: