RnoINT0168546 @ rn6
Intron Retention
Gene
ENSRNOG00000026115 | Zfp646
Description
zinc finger protein 646 [Source:RGD Symbol;Acc:1561579]
Coordinates
chr1:199323628-199330997:+
Coord C1 exon
chr1:199323628-199328967
Coord A exon
chr1:199328968-199330702
Coord C2 exon
chr1:199330703-199330997
Length
1735 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TCCTCTCCTTCTCTCTGTAGGAG
3' ss Score
12.55
Exon sequences
Seq C1 exon
CTTGGCCCTTCTGCAGAGAGAATGCTGCTGCCACCTGTCTGTCCCTCCTGAACCTCCAGGGTTTTCTACCACTTTGCCCCATGGAAGACATGCCTCTCTCATTCAGTTGCTCTGACTGTCAGCGCCATTTTCCTAACCTCCCAGAACTGTCACGGCATCGGGAACTGCTCCATTCATCTGCTAACCAGGACAGGGAGGAAACTGATGGCATTCCTCACCCCTATCGTAGTCACTCAAGGAGCTTGGCCAACCACCAGCGGAACCATGAGACTGGTCTTTTCCCCTGTACCACCTGTGGCAAGGATTTTTCTAATCCCTTGGCCCTCCAGAGCCATATGAGGACACATGCTCCTGAGAGCCACCAAAGGCATGGGCCCCCACATGCCAAGAAAACCACTGCACGCCTTCAGAGTGAGACCATGTCTACTGACTCCTGGGGTCAAAGGCTTGGTTCTGGGGAAGGCTGGGAAAATCAGACAAAGCACGCACAAGAGACATGTGAGTGGGAATCTGGAGCTGATCCCAGGGCAGCGTCAGGGACTTGGGAAGATCCACCTACCAAACAAAGAGAAGGCTTAGAAATTCAGCCAGATTGTAAAGGAAGTACAGGGCACTGGGTAGCCACCGCCACTTCTGATGGAGCACCACCGCTCCCCACCGCAGCGAGCAGCCTCCTTAGCAATTTGGAACAGTATCTGGCTGAATCAGTAGTGGACTTCACAGAGGCCCAGGAGTCCAGTGAGCCTCTGCCTGCTGAGGGGGAGCGAAGGTACAAATGTGACCAGTGTGGAAAGACCTATAAACATGCTGGGAGCCTCACCAACCACCGCCAGAGCCACACTTTGGGTATCTACCCTTGTGCCATCTGTTTCAAGGAGTTCTCTAACCTCATGGCCCTGAAGAATCACTCGAGACTGCATGCCCAGTACCGGCCTTACCACTGTCCTCACTGCCCGCGTGCCTTTCGGCTCCCTCGGGATCTGCTGGAACATCAACAGTCCCATGAGGGGGTAAAGGAGGAACAACCATGGGAAGACAAAGAGATGCCTACCACAAATGGACATGCAGATGAGAGGAACTGGGGTCAGCCATCTAAAACAGAGATGATGAATGGTTCTGGGGAGCTCAGCTCTTCTGGACAGCTAGAAGATGGTAGCTCAGAGGAGTATCGACCTTTCTGTTGTGGGGACTGTGGCCGTACCTACCGTCATGCAGGTAGTCTCATCAACCATCGAAAGAGCCACCAAACAGGTATCTACCCCTGTTCCATTTGTTCCAAGCAGCTATTCAATGCAGCTGCTCTGAAAAACCATATTCGTGCTCATCATAGACCCCGGCAAGGAGCTGGGGAAGATGGTCAGTCATCAGTGTCCTCAACTGCTCTTGTATCAGGTGAGAATGCTCCAAAAGCGGAAGAGGTCCCCTCTGTCAGCCTGGACCATCGTCCCTATAAGTGTGACGAGTGTGGTCGGGCTTACCGCCACAGGGGGAGCCTGGTGAACCACCGCCACAGTCACCGGACAGGGGAGTACCAGTGCTCACTCTGTCCTCGAAAATACCCCAACCTTATGGCTCTGCGTAACCATGTGCGGGTTCATTGCAAGGCAACACGCCGAAGTACAGATCCAGGGACTGATGGTTCACCCAGCCCTGTCAAGAAAGAACAACCTGATCCAGTGGGAATAGAAGCAGCATTCCACACAGATGAGGAACATGTATGCAAACGTGAAGAAGAGCCTGTCAGTAACCTCCCAACAGCAGATAGGACAGTGCCCCTGGTGTGTAGTATTTGTGGGATGTTGTTTGAAGATCTCAAGAGTCTTGAACATCATGGCATGACCCACAGGGAAGGAGAAAAAAGCAGGACAGACAGCACATTGTCACCAACTAGAACATTTGCTTGCCAAGATTGTGGCAAGAGCTATCGCCACTCAGGCAGCCTTATCAACCACAGGCAGACCCACCAGACAGGAGACTTCAGTTGTGGGACCTGTACCAAGCATTTCCATACCATGGCTGCTATGAAAAGCCATTTACGACGTCATAATCGACAGTGGAATAGAAGGCATCAGAAACAAGATAATAGTACAGGTGAAGAAGAAGCCAAACTCCCACCTGTGGGTACTTGGACCCTGAAGGTGGAAAAGGATGAGGACCCAGATTCTTCCCAAGATCCTTTGGGAGAAAGTCCTTGTAAGACTGAAGACAACCTGGAAGGGGATGGGGACTGTTTGCAGGTTGGATCTAAAGGCAATGAATGTGTGCTTAAAAAGGAGGAAGCCCATTTTCTGGGTGATAAAGAGGGCATAGGCACCGAGGAAGGACTAGAAAAGAAAGAGGCCTGTTTCCTTGACGACTTAGACATCCCAGGTGATGAGAGCAGTGAAACTGGCTTCTGTGGTAGCCTTTCTGGGGTTGAAAGTGACCAAAAGAAGAGCATTTGCCAGTCTGACTCCTACTCTGCTGACACTGACACTGTCTGGAAGTCCGAAGCCACTCACACATGTTCTGACTGTGGGGATTCTTTCCCCCATGCTACTGACCTGTCGAGCCATAGGTCCTGCCACCCTCCAGGCATCTATCAGTGCTCTCTCTGTCCAAAGGAATTTGATTCTCTGCCTGCCCTTCGCAGTCACTTCCAGAACCATAGGCCAGGGGAGGTAGCCTCAGCACAGCCCTTCCTCTGCTGCCTGTGCGGTATGATCTTTCCTGGGAGGACTGGCTACAGGCGTCACCTGCACCAGGCTCATGGCACCTCTGGTGTAAGTGAGGGTTCGGAAGAAGAGGAGGAAGGCACAGCAGAAACAGCCTCTACCCACAGTCCTCCCCTACAACTCTCAGAAGCAGAGCTGCTGAATCAGCTGCAGCGTGAGGTGGAAGCTCTAGATGGAGCAGGTTATGGACATATTTGTGGCTGCTGTGGTCAGACCTATGATGACCTGGGGAGCCTGGAACGTCACCACCGAAGTCAAAGTTCCAGCAATAGGGCAGAGACTGTGCCTAGCCATTTGGAAGGATCAGGTGATGCAACAGAAATGGTTGCAGATCATGGCTTTGAGGGCACAGTGACCTCTGTCTTGGAAGAAGGTGGGGACATAAAGTCCGAAGAGGGAGTGGGTGGCACAGTTGCAGACAGCCTTTGCATGAAGGCCGGTGAAAGCTTTCTAGAGTCCCACCCCCGCCCTTTCCAATGTAACCAGTGTGGCAAGACCTATCGCCATGGAGGCAGCCTGGTGAACCACCGAAAAATCCACCAGACAGGTGATTTCATCTGTCCTGTCTGTTCCCGCTGCTACCCCAACCTGGCTGCCTACCGGAATCATCTGCGGAACCACCCTCGCTGCAAAGGCTCAGAGCCCCAAATGGGGCCCATCTCAGAGGCAGGAGGCCGCAGTGAACCCCAGAATGCTGCAGAGGCAGGGCAGGAGCAGGCTGTCGTAGGGCAGCTCCAGGAAGAACTTAAAGTGGAGCCCTTGGAGGAGTTGGCAGGTGTCAAAGAAGAAGTGTGGGAGGAGACCACTGTAAAGGAGGAGGAACTGGAGCAGGGGTTAGAGACAGGCTGTCAGACTGAGGTTACCTCTGAGCGGCCCTTTAGCTGTGAAGTATGTGGCCGCACCTACAAGCATGCTGGCAGCCTTATCAATCACCGGCAGAGCCACCAGACTGGCCACTTTGGCTGCCAGGCCTGCTCCAAGGGCTTCTCAAACCTCATGTCACTCAAGAACCACCGGCGCATCCATGCAGACCCTCGACATTTCTGCTGCAGCGAATGTGGGAAAGCCTTTCGCCTGCGGAAGCAGCTGGCCAACCACCAGCGGGTCCATGCTGAGCGACGTAAAAGTAGGGGCACCCAGAAACTGATTCGTGAGGATCGGCCTTTCAGGTGTGGGGAGTGTGGCCGGACTTACCGCCATGCTGGCAGCCTCCTGAACCACCAATGCAACCATGAGACAGGCCGTTACAGCTGCCCTTTCTGTTTTAAGACCTATTCCAACCGCAAAGCCCTGAAAGACCATCAGAGGCTGCATTCTGATAGTCAACGGCGGCGACAGTCAGGATGGCCCCAGAAGACAGCAGCTATACATTGTGCCCTTTGTGGCTGTGGCTTTTCTGGCCAGGGATCTCTAGAGCAACATCTACGGGAACATGAGGAGAGCAAACTAGAGCTGGCCAGTGGCCAGGGAGGCCAACATGGTACAGAAGACAGTAAGGAGGACCTTGATGACTGGGGGCTGGAGGGCAGGTCAGATGATATTGAGTCAGTACTAGAGCATGAAGTCAAGAGGCCTGGGGAGCACAGTCCCGGTAGACCAGAATGTTCAGAAGTCACAGAATCTACACAGGAAATAGGAAAGGTAGATGGCTGTCAAGGAGACAGGGGACAAATGAATCACAATGGTGCCTGGGTTCTTCAGGATCAGTTAACCAAGCCAGAAGGCAAGTTGGAAGACACTGTTTCCAGGAATCCTTGTCACCTGTCTGAGAGCCAGTCCAATGGTCCTACTCTAAGAGATACAGATAGCTGGAATGGTGCAGACAGCAGCTCACAACTCCAGCCAGAGAGCCACTGCTGCAGCCAGTGTGGCAAGACCTACTGCCAACCTGATGGCCTCTTGAACCCCAGCATTAACAGAAAAGACTGTCACAGTTGTTTACTCTGTTCCAAAGAGTTCTTAAATCCTGTGACCACTAAGAACCACAACCACGTTGCTGCCCAAAGCTTTGCCTGTAGTACCTGTAGCAGAGTGTTTGAGGCCCACAGTGAACTAGCCACACACATGAAGACTCATGCTGTTGAGCACAGTCAGGGGGCATGTCAGATGGAGGAAACCAGAGACCCACAAGCGGGGATGCTAGAGGTGGATCTTCCTGGTCCAGGGAAAACTCAGGAGGCCCCATCAGGACTTCCTAGAGACCCAGGGGAGAATGGGGAGCCAGCTAATAGAGGACAAGGAATAAATTTCACAGCAGCTGAAGACAAGGAACGTCCCTTTTGCTGTGCTCAGTGTGGGCGTTCTTACCGCCATGCTGGTAGCCTCCTGAATCACCAGAAGGCCCATACCATTGGACTCTACCCCTGTTCCCTGTGTCCCAAACTTCTGCCCAACTTGCTGTCTCTGAAGAACCACAGCAGGACCCACACGGACCCCAAGCGCTACAGCTGTAACATCTGTGGGAAGGCTTTCCGAACCGCTGCCCGGCTTCAGGGCCATGGACGGGTCCACGCACCCCAGGAGGGACCATTCACTTGTTCTCATTGTCCTCGCCACTTCCGCCACCGAATCAGCTTCCTGCGACACCAGCAGCAGCACCAGGAAGAGTGGACAGTGTCTAGCTCAG
Seq A exon
GTATGTGGGGTGAGCTGGGCAAAAGATTAAGGATCCAGAAAGAGGTGGGCACAGAGGAGAGAAAGCATGACCCAGAGGTGAGGGGAGCAAGCAGAGAAGAGGATCAAGTGGAGTCTAAGTGGTAGGAGGCATGGACAGGGACTAATCTAATTTGAAAAGGCTGGCTGCCCTTGAGCCACTGAGTTATGAATCCTGCCTGAGTCAGGAAGATGGACGCTGTGGTTGGTTGGGGAGTGGTGTGGACTCTTTTTTTTTTTTTTTTTTTTTTTTTAAAGATTTATTTATTTTATGTATATGAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCCGTGTGGACTCTTATATAGCCAAAGAGGAATGACTTTTTTCTTTCAGTAAGCAGAGTTATCTGGGTCCTACTGCTTCTGAGAATCCTGATTTAGTCAGTAATGATGTCCCAGGCAAAAGGATGAAACCATGGGCTTTGTTTAGGCTCTGGTCTTTCCTAGAGTTCTTGGCAAGAAGCCAGGGGATAAGAAAGAGAAGGGTGGAAGATTACAGACTCCTGGGTTGCCATGCAGATAGTTCATGGTCTGCAGGTCTAAGGTGAGGTGGGCTTTCCTGCTCAGTTGGTGACTTCTAACTTGCTACTTTATGGCTTTACTGCTGAAAGTGAGGCTTCTGGTCCTTCCTGTGAGTGTTGCACTACATCTTTGTGTTTGTTCTTTTAATCTTTTTTTTTTTTAAGCCTTATTTATTTATTGTATGTGAGTACACTGTAGCTGTCTTCATGCATGCACACAGGAAGAGGGCATCAGATCCCATTACAGATGGTTGCTAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTATAAGAACAGTCAGTCCTCTTAACCACTGAGCCATCATCTCCAGCCCTGTTCTTTTAATCTTAACCTTCTTCTGCTGTAGATCTTACAAGAAGCCAACCAGACTACCCTTTCTGCAGCACCTTCCCCCAACACGCCCCTTTAACTGAAGAACTGACTCATAGATAATTGTTTCTTTGAAGTCAGGCCCAGTTGAGCGGCAGCAGTCATTAGTCCCTATCTCTCATCCTCTATCACAGTGAATCTCTGGTGTAAATTGTCTCCACCCAGCCCACTAAAGGGTATGGCTGTGGAGGAAGGGGCAGTCTATGTATTCAGCAAGCTATTAGCTCATATTCCACATCTAGAGAAGAAAATCCATTCCGTCTACAGCCACCAAGGGTGGTGTCCCTGAAGTGGTATGCCCTCGCCCAGAGCTTGACTGGGAGGATAGAATAGTGGTGATGGGTCCCGAGAACTGAAGAAATAGCTTTCTTGTAACTTCAAGTACAATGAGCAAGGGGCCTGTTAGCCAAAGCACATACTAATTGGGAAATTGGGAGTTGTAGGATTTGTGGGCTTGGTTTGTTTTGTGAGGGGGACTGGGGATTGCTGGGCATGGTACCTGGGGCCTCACAAACAGTAGGCAAACACTTGACTACCTAGCTATTTATTCCCGTCTCTTGAGTGTCTTTGTGCTTGTGTTATGTCGTGAAATAACCTGCAGGGCTGGAGAGGTGGTGTAAGGCCTCCCTCAGTGTCCTCTCCTTCTCTCTGTAG
Seq C2 exon
GAGCTTCAGTGGCACCAGCAGCAAGCAGAGGGGACTGCTCTACAGCCTCACTTCAGGACCCCTCACCCCAGTGGCCTGCAGACCTCAATCTGTCCCTCTGAACTTCAGGTCTCCAGAGGAGAGCTCACTGAAGTTAGGGGTGCAGGCAGGGAGAGGCTTGCTCTCCTCATTTGCTCAGGAGTTGCTTGGGCATCCCCATCTCCTTTTCCCACGAAGAGGACCCTGATCTGGTTTTTATCTTGAGAAGGGCATGAGGTAGTCTTCATGTCTGTGCCCATGAAAGATGAAGGATCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026115:ENSRNOT00000036187:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.498 A=NA C2=0.455
Domain overlap (PFAM):
C1:
PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF138941=zf-C2H2_4=WD(100=1.4),PF138941=zf-C2H2_4=WD(100=1.4),PF0009621=zf-C2H2=WD(100=1.3),PF139121=zf-C2H2_6=WD(100=1.5),PF138941=zf-C2H2_4=WD(100=1.4),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF0009621=zf-C2H2=WD(100=1.3),PF134651=zf-H2C2_2=WD(100=1.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCAGAAGGCCCATACCAT
R:
GGGTCCTGAAGTGAGGCTGTA
Band lengths:
357-2092
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]