MmuINT0179643 @ mm9
Intron Retention
Gene
ENSMUSG00000054967 | Zfp647
Description
zinc finger protein 647 [Source:MGI Symbol;Acc:MGI:3052806]
Coordinates
chr15:76748065-76748491:-
Coord C1 exon
chr15:76748399-76748491
Coord A exon
chr15:76748192-76748398
Coord C2 exon
chr15:76748065-76748191
Length
207 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TCAAAATGCTGTCATTCCAGGCC
3' ss Score
5.31
Exon sequences
Seq C1 exon
CCCCACAGGATCGCCTGATTTCTGTTGTCCTCGCAGTCTTGAGATACCAAGATGGCAGCAGCCGGGCTTCTACCGCTGCCAGCAGCACCACAG
Seq A exon
GTAAGTGGTCCCAAAAGCTTATTCAGTGGCTTACCCAAAGCTCCCGTAGTCCTCCTGTGCCCAGGCAGTCTGAATATCACCACTTCTCCTCAACTCTATCACCTCTGCCTATGGAGCTCACGTGACTCTAAGGGGGCCCTCGCCAATCTCCCACGTCACATGTACTGCCCTTCCAATGGACGGTTACTCAAAATGCTGTCATTCCAG
Seq C2 exon
GCCAAAGTGACCTTTGAGGATGTGGCTGTTCTGCTGTCTCAGGAGGAGTGGGCCCGCCTGGGCCCTGCTCAGCGGGGCCTCTACCGACACGTCATGATGGAGACCTACGGGAATGTAGTCTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054967-Zfp647:NM_001168276:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATCGCCTGATTTCTGTTGT
R:
CCAGTGAGACTACATTCCCGT
Band lengths:
214-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: