Special

MmuINT0179671 @ mm9

Intron Retention

Gene
ENSMUSG00000056592 | Zfp658
Description
zinc finger protein 658 [Source:MGI Symbol;Acc:MGI:2652821]
Coordinates
chr7:50819984-50822764:+
Coord C1 exon
chr7:50819984-50820213
Coord A exon
chr7:50820214-50822637
Coord C2 exon
chr7:50822638-50822764
Length
2424 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
TGTTACCTTTTCTGTTACAGAGA
3' ss Score
10.45
Exon sequences
Seq C1 exon
GTCAAAGGCAGGCCACATCAGCCAGGCTGGGGGATTTTTCTACCTCACCACAGCTGGCCTCTCTGCTCAGCTGCTCTCCTGGGAACCTCTAGCCACTCAACCAGCTTCCAGTTCCTGAGAAAAATTGCATCTGCCAGCAAAGAGGCAAGAGAGGAAACATACCTGCTGACATGAAATTGTCCCAGAAGGCCCAGAGACTGCACCCACAGGAGCAGGAAGGGTCCCGTGAG
Seq A exon
GTAAGCAGCAGCTGCCGAGGGCCCAGTTCTCTAAAACTGGAGGACAGACATGGGAAGTAGCAGATCCTGGGCTCCTCCAGCTAAGAGCAGAGCACAGGGGCCAGTGCTCCTGTACCTCCTAGTCTGTCATGTCACTCATTGTCCTGCCTCCTGGTGCTTAGGTAGATGCAGCCCTCAAACCTGTGCCCCCCCCCCCAATATCCTCAGTCCTGTATCTTCTTGTCCCATTTCATAGCCACTGTAATTTTGTGAGTCTCTTGAAGGAGTTCATTTGCCATGGATTCGTAGCGGGTAAGTCTTAGAGATGAGTGACTGAGGATGCCTTGCCAAAAAATAAGATCCATACTGTTTATGGCTCTAGAGGCAGTGAGACCTGGGAGAATGGAGCCAAGAAATAAGGCTGTCTTAGTTAGGGTTTTGCTGCTGTGAGCAGACACCATGACCAAGGCAACTCTTATGAAGACATTTAGTTGGGGCTGGCTTACAGGTTCAGAGAATCAGTCTATTATTCTGAAGGCGGGAACATGGCGGCACCCAGGCAGGCATGGTGCAGGCAGAGCTGAAATCTTCATCTGAAGGCTGCTAGCAGAATACTGGCTTCTAGGCAGCTAGGATGATGCTCTTAAAGCCCACACCCACAGTGACACACCTACTCTAATAGGGCCACACCTTCCAATAGTGCCTGCCACTCCCTGGGTAGAACATACATAAACCATAACAGAGGCCGACTAAAGTCTCATGCAGTGACCAACTTTATTCCAAGCATCAGACAATTTATATTCAGAGGGCTTAAGGGGAGTCACATGTGTAAGGTGTGTCTAATCACAAGGGCAAGGTTTATGGGGCAGACAAGCCACACACAGCAAAACCATGTTTTTCCAGAGACACGTAAACAAATAACAATACCCAGTTGTAATGAGTAACCTGAAGTAAATTCACTCCTATCCACTTGACCTGGAAGGAGCATGAAAACCCATTCCAAGGACAACTCCATAGTTTTTGAAGAAACTGAGGTCACAGATCTTGTCTGCTCACAAGCATTCAGACTTCTCACACAGCTCCATGACTGGACAAGATTCTTCCAGTATACCATACATGCCATTACTTATATATGAAATAACTTGTCAGATGTATGCACACACTGTAGAGATGCATTGGAAATATTTCTGTAGCAGCACCTGTCCTTTGGCTAGAGTCAGTGTGTAGGTTGGGAAACACTTTCTTATTCTCCCTGAAGTCTCTGTATGCTGTGTGAATCAGAAATTTATTTCCTTTTCACTCCCTCTTCTGGAAATCCTGCCATTCAAACTTGATTCCCCACTGTATTTTTTAAATTATTGATTGTTTAGATTTTGTTTTCATTCATTGTAGGGGAATGGTACGTGCATACTCAGGCATTGTGTGGAAGTCAGAGGACAACTTCCAGCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTTTCTCTCTCTCTCTGTATATCTTGGTCAAGCAGGGCAGCAATCATTTTTACCTGCTGAGCCATCTCCTTCACCCTAATTCTCTATATTAAAGTTTTTTTGATTTTTTTCCTTTTTCTGGCAGAATATTTATTTAACTTTCTAATCTGTCTAATACTTGTTATTGTTTTGTTTGTTTGTTTGTTTGTTTGAGACAGAGTCTCATTGTGTAGCCTTCTCTGGCTAGAATTCACAGCCTAGACCAGATTAGCCGTGAACTGATAGCCATCCACCTGCCTTTTTCTTCAGAGCACTGGGATTAAAGGCGTGCACCACACCTACCTGTTATTGTCTTAAGAGACAATTTCAAGCTTTTTTTTTTTTTAATTTGTAATATATCTTTCAGTGAGTTGTCTTCTGGCTCGTGGATGGATTATTTATGTCCAAAGATCCTGGAGGTATTTGATGTGGGATTTTTCTGAATTAGTGAAAATGAAAATGAACTCCCCAAGTTAAAATGAAACATCGCTGTCGATTTTGTGCAAACTCTTTAGTCTTGAGTACTCCTCCCTCGCCTGGTTCTCAATGAATCATGATAATTCACCACTCCACTGAGCTGCCTTCCCTGAAGCCTAGAATAATGTTAGTTCTAAGTGTCAAACTGCTTATTCTTTTTTGAAGTATTAGTGACAACCCATGTCTGGCTGCTTTGGGGATGAAAATCTGAGTGTACAAGAGATGGATATTTTTATGAACTTTCTTAACTTCTGAAATATTTATATAGCACACATTATATAATATATATTTATATTATATATGATTCATATAATATGGAATAGATATTTTCTGGAAAGCTGAATGATCTGTCATAGTAAAGAACCGCTGAGCTGCTGTGCTGTGTGCCCTGTCTACCTCTCTGGTGAAGAGTAACTCAGAATGGACTGCACTCTGTGTATCATAGACTGTTACAGTGTTACCTTTTCTGTTACAG
Seq C2 exon
AGATTGGTGTCCTTTGAGGATGTGACTGTGGACTTCAGCCAGGAGGAGTGGCGACGCCTGGACTCCGTCCAGAGACACCTGTACCAGGACGTGATGCTGGAGATCTACAGCCACCTCTTGGCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056592-Zfp658:NM_001008549:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
ORF disruption upon sequence inclusion (1st CDS intron)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.800 A=NA C2=0.023
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NA

							
C2:
PF0135222=KRAB=WD(100=95.3)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000005597





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000103606, ENSMUSP00000131972
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr19:51573402-51581390 
ALTERNATIVE
HsaINT0186303
(ZNF175)
Human
(hg19)
chr19:52076655-52084643 
ALTERNATIVE
HsaINT0186303
(ZNF175)
Rat
(rn6)
chr1:99486313-99488666 
LOW PSI
RnoINT0081835
(LOC102546648)
Cow
(bosTau6)
chr18:57902795-57904189 
ALTERNATIVE
BtaINT0164955
(ZNF175)
Chicken
(galGal4)
chr18:17520-17525 
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"