RnoINT0081835 @ rn6
Intron Retention
Gene
ENSRNOG00000023233 | LOC102546648
Description
uncharacterized LOC102546648 [Source:RGD Symbol;Acc:7541917]
Coordinates
chr1:99486253-99488793:+
Coord C1 exon
chr1:99486253-99486312
Coord A exon
chr1:99486313-99488666
Coord C2 exon
chr1:99488667-99488793
Length
2354 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
TGCTACATTTTGTGTTACAGAGA
3' ss Score
8.31
Exon sequences
Seq C1 exon
ATGAATTTGTCCCAGAAGCCCCAGAGGGTGCACCCACAGGAGCAGGATGGGTCATGTGAG
Seq A exon
GTAAGCAGCAGCTGCCCAGGGTTCAGTTCTTTAAAACTGGAGGACAGACATGGGAAACAGCAGATGCTGGGCCTCCCATTCCAGAGGCAGACTTGTTCCTCCAGCTAGGAGCAGACCACAGGGGCCAGTGCTCCTGCACCTCCTGTCCTTTCATGTTACTCATTGTCCTGCCTCCTGGTGCTTAGGTAGATGCAGCCCTCAAAACTGTGTCCCCCGCAGGGTCCTCAATCCTGTATCTTCTTGTCGAGTCTGATAGCCATTGTCATTTTGTGAGTCTCTTGAAGGAGCTCATTTAATGTGGATGCATGGCAGGTAAGTCTTAGAGACGATGAGTATCTGAGAACGCCTTGCCAAAAACATATTGTTTGCTGCTCTAGAGGCAGTGAGACCTGGGAGAACAGAGCTGAGAAATGAGATTGTCTTAGTCAGGGTTTTACTGCTGTGAGCAGATACCATGACCAGGGCAACTCTTACAAGGACAACGTTTAATCCATTATCATCAAGGTGGGAGCATGGCAGCATCCAGGCAGGCATGGTGCAGGAGGGGCTGAGAGTTCTACATCTTCATCTGAAGGCTGCTAGCAGAATACTGGCTTCCAGTCAGTCTTAAAGCCCACACCCACAGTGACACACCTACTCTAACAAGGCCACACCTACTCCAAAAGGGACACACCTTCTAATTGTGCCACTCCCTGGACCGAGCATATGAACTATCACAGAGGCAGACTAAAGTCTTTTGCAGTGACCAACTTTATTCCAAGCATCAGATATTTTATACTCAGAGAATTAAAGGGAGTCACATGCATAAGGTGTCCAATCTCAAGGGCAAGGCTTATGGGACAGGCAAGCTACACGTGGCAAAACCATGTTATTCCACAGAGACACATAAAAAAATAATGAAGCCCAGTTGTAATGAGTAATCAGAAGTAAATTTACTGCTAACCACTTTACCTGGGAGGAGGATAAAAGTACATTCCAAGAACAACTCCACGGTTGGACCAGATTCTTCCAATAGACCATACATTTCATTACTTATATATGAAATAATTTGTTAGATATATGCACACATTTAGAAATACATATGGTAGCAACACTTGTCCTTGGCTACATTCCATGTATAAGTTGGGAATCACTTCCTTATTCTCCCTGAAGCACCTGTGTGCCACACACGTCAGAAACTTATTTCCTCTTCACTTTCCCTTCCAGAAATCCTGTCGTTCAAACTTGGTTCTCCACTGTACTTTTTAATTATTGATTTTTTAGGTTTTGTTTTCCTTCATTGTGGGGAGTGGTACATGCTTACCCAGGCATTGTGTGGAAGTCAGAGGACAACTTTTAGGAGTCTCTCTCCTTTCACTTTGTGTATCTTGGGGATCGAGGTCATCATCAGGCAGGGCAACAAGCATTTTTACCTGCTGAGCCATCTCCTCCACTCTAACTCTCTGGTTTCAAGTCTCAGTCGCACTTTCTAATCTGTCTAATAGTTGTTATTGTTTTGTTTGTTTGTCTGAGACAGAGTCTCATTGTGTAGCCTTCTCTGGCTAGAATTCATTGTCTAGACCAGACTAGCCTCGAAATGGTAGAGATCCACCTGCCTTTTTCTTCAGAGTACTAGAATTAAAGGTGAGCATCACACCGCCCGTTACTGTTGTTTTAAAAGGCAATATCAAGCTTTGATGATGATGATGATGATGATGATGATGGTGGTGGTGGTGGTGGTGGTGGTGGTGATGATGATGATGGTGATGGTGATGGTGATGATGTCATCGTCGTCTTTCAGTGAGCTGTCTTCTGACTCATGGATGGACTATTTATGTCCAAGGATACTAGAGGTGTTTTGGTGTCTGATTTTTCTAAATTAGTGAAAATGAAAATTAATTCCCCAAGTTAAAACGAAACAGCGCTGTTGGTTTTGTGCAAAGTCTTCAGTCTTGAGTGTTCCCCCCTCACTCCGTTCTCAATGAATCATGATAATTCACCACTCCACTGAGCTGCCTTCCCTGAAGCCTAGGATAAAGTTAGCTCTAGGTGTCAGGGTGCTTATTCCTTTTTGAAGTATTGGTGAAGTATTTCTGGCTGCTTGGGGGATGAAAATCCAAGTGTATAAGAGTTTTATAAACTCTAGCTTCTTAAATATTTATATAATATACATTAGATAATACATATTTATATAATATATTATTCATTTAATATGAAATAGAAATTGTCTGGAAAGCCAAATGATCTGTCACCATTCAAGAGTCACTGAACCACTTCGCTGTGTGCCATGCCTGCCTCTTCAGTGAAGAGCAACTCAGAATGGACTGCACTTTGTGTGTTAATAGCGTCTCACAATGCTACATTTTGTGTTACAG
Seq C2 exon
AGATTGGTGTCCTTTGAGGATGTGACTGTGGACTTTAGCCAGGAGGAGTGGCGGCGCCTGGACCCTGCCCAGAGACGCCTGTACCAGGAGGTGATGCTGGAGATCTACAGCCACCTCTTGTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023233:ENSRNOT00000074820:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.850 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]