MmuINT0179790 @ mm9
Intron Retention
Gene
ENSMUSG00000030469 | Zfp719
Description
zinc finger protein 719 [Source:MGI Symbol;Acc:MGI:2444708]
Coordinates
chr7:50834956-50839666:+
Coord C1 exon
chr7:50834956-50835136
Coord A exon
chr7:50835137-50839437
Coord C2 exon
chr7:50839438-50839666
Length
4301 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
GCTTTCTGATATCTTTGCAGACC
3' ss Score
9.8
Exon sequences
Seq C1 exon
AATCGGAAGTGGCCTAGAGTGATCACATCCGCTCAGATCTTAAAGTAGTTCGCCTCTCCTGTCGTTGCCAGGGTAGCGTGGGTGTTTGGAATCCGAACCCATGGAATTGTGGGTGTCTGTGGGCGGAAGTCTCGCAGTCCTGGCGTGCCGTGTGCAGAGCTTCTCTAAGGTGTAATGTGAG
Seq A exon
GTGAGTGGATGTGGAGCAGAGGACGCTGTGCTGCTGAGCGCCGGTTTGTGCTGAGTGATGGTTGAATCGGCCCCAGGGGGGGATGAGGTGGATAAAGTGGGGGTCGTTCGGTTCTCTTTCATTCTGTTCCTGCGGGTTTTCCGCGTCTGTATTTTGTCACTTCCCAGTATGCTGTCCTGTGGGATTTCCCACCGTCGTCCGTGAAAATTACCATGTGAGGGCATTCGGGGCAGGACTCAGTGAGTGGGCGCTGCAGCATCCGGGAGCTTCAGGGCGAGGACCTTGAGATGGCTTGTGATCCGCTCAGTCTGTGATTGGCTTAGGAGTCAGGCGATGGAGCTTGAGGCCAGTGTAGGGTGCTTTGTGAGGGCGACCGCGTCGCTTTCTGGGCTGTTTGAGTAGCTGGTAACTGGAGCCCTGGCTCCTGGTCAAACACTGGCCTTCGAGAGGAGATAAACTCCAAAGAGTAAGAGAAAACGGGGAAATGAATTTATTTACGTTTGGTCCAAACTGGAGACCCAGTGCCCTCCATCTCTGTCAGCCTAAGCAGTATTAGCAATAGAAGGCACTGCCTAGAAGCCAGGAGATGTGTTTAGGTATATTTAATGTGGTCACAGTTATCTAAGCGGGGACATAGCCTTGGGGCTGCCCTTAGGTGTTCTGGATATTTCCTTTCCCCCGTATGCAACTGAAGACAGAAGAAAGATTTAAGAAAAAACTAGTCATTTCAGTTACAATTGAAAGTTTACATAAATACTGCAGTCCTTTGCTGATGTGAGGTCTGATCGGAGGTTTGACTTGTGCCTGGGATCTGTGAATTTGGCAAGGATTGGTAATTGGCAGTTACGCAGAAAGGTGCTGCTGTAAAAAGATTGTAAGGCAGAAGCCTGGGTTCCTGCATCCAAACAGGCAAGGGCCAGCCTCATCCAGTCTGCCTACTGAAGAGACCAGTGAGGAGGAAAGGCAGGAGAGTGGAGATGTGGGTCAGCAGTGTTGGGTTCCCAGCACCCACACCACATGGTGCCTTGGAACTGCCTGGTGGGACGATTCCAGGGGATCCGTGTTCCCTTCTGGCCTCCCAGCTAATGGTGCACAGACAAAGACAGACAAAACACCCACACACGTTTCATTTTTAAATGTTTGAATAGTAAGAATAAATCTTTAAAAAAAAATTTTTTTTTCCGTTAATGTTGGGCGAGCTGCCTTCTCCAATTATTCCCCACCTCCTAAAGAAATGTTAAGGAAAAAAAGAAAAGCAGAGGTTGAGACTCCATACAGTGGTAACGTTGAGCAGGCGGAGAGGTAAAGTGACCTAGTGGCCCCATGTCTGTCTCTAGTGCACAGATTTGAGGTTAAGTTTAGAAATCAAGCTTTATGTATTAAAGTAGTGCTGCAGGTTGTGGTGGCACATGACTGTCCTGTAATCTTAGCACTCTGCACTCGGAGGCTGGAGGATGTCTACATTATGGAGGCCAGGCTGGGCATGAAGTAGGTTAGCGTTTAAGTCAGAGCTGAAGTGCTAAAGACATACATAATGCTTTTTAGTAAAAGCAGCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTCATCTTTTAAAATTTATGTGTATGAGTGTCTGACCGATGGTCACCAAGGGACACCAAGTGTGTGTCTAGTGGCCATCTGCTCCCCTGGAATCAGACACAGGAGGCTGTGAGCCACATGTGCAGATAGGTGCTGAGCCTGAGGCATGCGCAAGAGCAGCAATTGCTCTTAACCACTGAGCATCTCTCCAGCCACTGTTCCTTCCTTCCCTCCTCTTGTCTCCCTCCCTCCTTCTCTCCTTCCCTCCTTACTTCCTATCTTTTGACAGGCTATTCTATGTACCCCCGGCTAGCCTGAAACTCAGTTTGTAGGCCAGTCTGACCTCAAGTGTGGCTGTGATCCACCTGCCTCTGGCGTGCCGGGATTGTAGGTCTGCAACCAAAGTTTCCAGAAACCAAAAGTTTAGTTGTCTTTGGTCTCCTCAACAATTAGTCAATATCCATCTATGTATTTTACCTAAATAGCCTATTAGTTTCCAACTAAGAATGTCATTGGAGAGCCTATGAGGCCTGTAAAGGAGGTTTTCTCACCGTGTTGTAACCTGCCTACCTAGTGGTACCACCAGGGTTCATTATTTGTTGTTATTGTTTGGGTGTGTACGTTACAGGCTTATTTGGCTATGGGTACATGTGTGTGTACAGGTGAGCGTGGAAGCCAGAAGACATCATCCCGCCTTTCACTCCAGCACTCCTACCTTACTTTTTGAGCCTGTCTGTCTGTCTGTCTGTCTGCCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTTTGTGTGTGTGTGTGTGAGAGAGACATGTATAGGTCAAGAGGATAGCTATCAAGAGTTATTCTCTCTTTCTACCATGTGTGTCCCAGGTATCAAACTCATGTTGTCAGGCTTGTTGGCACCTTTTCCCTCCAAGGCAGTGGTTCCCAGCCTTCCTACTGCTGTGACAGTTCAGTAATAATTCCTCATGTTGTTGTAGCACAGAGAAGTGAGTACCTGCAAGGAGAGGTGGGGATGGATGGGGAAGGACGGATGAGAGAGGAATAATGAGATCAAGACAAAGTTTCTGAACAAGGTCCAAAGTGTAATTCTTAAGTCTGAGTTTAAAGGGGGAAGGAACCCATCCCCCACTTTGCCAGGATCTCATAGCTTTGCCTGGATCTCGATCTCCTCCCGAAGACAAGCTCAGCTGCTCAGCAGGTTGTGGCTTCTTGCCAGGAAGCTGCAGATGTGGCAGGACAATAGACTTCAGGCCAAGTGACCCTACCTCAAAAAAGGAAAGCAGCATCAATAATTGCTTCCAGCCTGGACTCTGTCATTTGGACCCTTGTGTTGAGAGTTATTTGGGGTTATGTGGAAACTAAGAAATTAAACACGCTAGGGAAAATTTGTGTCAGTCATAATTTCAGGATCCTGCAGCGTGCCAGTCACTGGGAGGTAGTTTGTAACCTGGCACTCCTGTATTGTCTTTAGAGGTCACTGAAAATCATTGATCTGAGTGACTACATCCAGTGTAGAGGGGTGACTCATTATAGACAAGGAAGACATGCATAGTCGGCCAGAGGGATGGTCATACCTGTAATCCTTACACTGTCTTGATAGGCGGACGGAGCAGTGGCACTATGACCTCGAGGCCATCCTGGAGTTTATAATGAGTTCTCTGTCAGCCTGTGCTACAGAATAACAAAATAAAATGGACAGAATAAGAAGGAGGACTGGTGAGATGGCTCAGCAGTTAAGAGCTCCGACTGCTCTTCCTAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGAGATCTGACGCCCTCTTCTGGTGTGTCTGAAGACAGCTATAGTGAAATAAATAAATAATTAATTAAAAAACAGCCGGGCATTGGTGGCTCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCACGCGGATTTCTGGGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAGGAAAGGGTAGGATTACAGACCAGAAGTCCTTGTGTATATACCTCATCTTTTCTGATCAAGAAGGGAATTGTGGTGGTGAGTGAGTTACAGAGATATGTTAGAAGAGATGGGCTGTGAGGTACATTAGTAAGTTTGAACAGTGCCTAGAAACAAATAAAAACTTGAACTGGGACAGTGTGTCATTTCGTATAAGTCAGATATATACTATACTGATCCTCTCTCTTTCATTTGATGACCTTAGATCATATTAAAACACCAGGTATAGTAGCCTTTGCCATACAGCTGAAAAGATTGTCCGGAAAATAAGCTAAGAGCTAGCTAATTTTTTTTTTTTTTTTTGATTCATACTTTTGACCTGGTAATCAGAAGCTAGGGGCTGATGAGCCTTATCCTGCATCAAATTCCCAATGCCAGTGACCAATACCTGCATCCTTGTTTTATGTCACCTTGCTTAATACCTTCCTGTTGTCACGGTTAAGAGGTAGAAGGGAGAGTTGGACATTTCTGGGCTTTGTCTGCTCTGCAGTGTCTACAGGATGATCTTCAGATAGAACTTTCAACTCTTCATGGGCTAATAAATTTTGAGTGAGTGATAATATGGTCATTGACTTTCCAGGGCTTTCTGATATCTTTGCAG
Seq C2 exon
ACCTCTGGGTGAGGCTAAGCCATTCATGCCGCCAATTTTCTCAACATAACCAAGTTGGCCTCTGCCCCACAACTCTACAAGAATCGTCCACATGCTGACCTATCTTCAGAATCCTGAGAAAATTAGAGAGAGACCAAGAGTAGAAACCACAGAGGACATGCCTACTGATATGAATTTCTGCCAGATGCCCCAGCAGTTGGGAGCAGAGGAGCAGGATGGATTGTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030469-Zfp719:NM_172482:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.541
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: