MmuINT0179883 @ mm10
Intron Retention
Gene
ENSMUSG00000011427 | Zfp790
Description
zinc finger protein 790 [Source:MGI Symbol;Acc:MGI:1923431]
Coordinates
chr7:29824830-29825787:+
Coord C1 exon
chr7:29824830-29824953
Coord A exon
chr7:29824954-29825691
Coord C2 exon
chr7:29825692-29825787
Length
738 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
GTCTTTTATCTCTCACGTAGGGC
3' ss Score
9.33
Exon sequences
Seq C1 exon
GTAATGACATTCAGAGATGTGGCCGTAGACTTCTCTCCAGAGGAGTGGGAGTGTCTGAGCCTGGACCAGAAGAGTTTATACCGAGATGTCATGCTGGAGAACTACAGCCACCTTGTCTCAGTGG
Seq A exon
GTAAGATGCCACCCTAGACAGTCCTAGGTGCCTTGGTGGCAACTGCTGACCCTTTTTTTTTTTTTTTTTTTTTTAAAGAAATGTCAGGGGTGAGCCGGGCAGTGGTAGCGCACTCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGGGGATTTTTTAGTCCAAGGCCAGCCTGGTCTACAGAGTGTGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAGAGGGAGGAAAAAAAAAAAAAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAGGAAGAAATGTCAGGGGGATTTCTGGCCTGCATTTCTTCTGGGAAATGGCTTGTGTATTTTGCAGAAATTGTGTGGTCAGTGGGAAACGACATGTTCACCATCCTCCCAAAATGCTTTGTGCTTTTTCTTTTTTTAAAGATTTATTTATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACATACCAGAAGAGGGAGTCAGATCTCGTTAGGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGATCTTCGGAAGAGCAGTCAGGTGCTCTTACCTGCTGAGCCATCTCACCAGCCCTGCTTTGTGCTTTTATTCCCTGTCGTTGTTCCCCTTCCTTTGTAACTTCTGGGGTTGTTTTCCTTGTGATCACCGCCTGTCTTTTATCTCTCACGTAG
Seq C2 exon
GGCTTTGCATTTATCAACCGCATGGGTTCCCTGTGCCAGAGAAAGAGCAAGATGCCTGCATGGATTTGGGCAATGAGCCTAGCAGATTTTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000011427:ENSMUST00000178162:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.152
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=97.6)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAATGACATTCAGAGATGTGGCCG
R:
CAAAATCTGCTAGGCTCATTGC
Band lengths:
214-952
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types