HsaINT0188415 @ hg38
Intron Retention
Gene
ENSG00000197863 | ZNF790
Description
zinc finger protein 790 [Source:HGNC Symbol;Acc:HGNC:33114]
Coordinates
chr19:36823285-36823790:-
Coord C1 exon
chr19:36823667-36823790
Coord A exon
chr19:36823381-36823666
Coord C2 exon
chr19:36823285-36823380
Length
286 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
GTTTCTCATCTTCTGGGCAGGTT
3' ss Score
8.45
Exon sequences
Seq C1 exon
TTGATGATGTTCAGGGATGTGGCTGTAGATTTCTCTCAGGAGGAGTGGGAGTGCCTGGACCTGGAACAGAGGGATTTATATAGAGATGTGATGTTGGAGAACTACAGCAACATGGTCTCACTGG
Seq A exon
GTAAGATTCAGCATTTTCCTTAGAAATTCCTGCTTTCTGTATTGTGATTTTTTTTATTGTCTTTTAAATGTCCAGGGTAACTTCTGACCTTTGTTTTTTAGAAAATGGTTTGCGCTTTGTAAATCTGGCAATAGTTATCATCAGTGGGCACTTCCATCTTTCCCATAGTTTATACTTATTTTTGTCCTGCCTGTAATTGTTTCTCTTCCTTAGTAACCAAAGAAGTAGTTGCAAATTTTAGAATCTTTACAATGTGGTTCTTTGCTGTTTCTCATCTTCTGGGCAG
Seq C2 exon
GTTTTTGCATTTATCAGCCAGAAGCGTTCTCTTTATTGGAGAAAGGGAAAGAGCCCTGGAAGATTTTGAGGGATGAGACAAGAGGACCTTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197863:ENST00000356725:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=97.6)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGATGTTCAGGGATGTGGC
R:
AGGTCCTCTTGTCTCATCCCT
Band lengths:
212-498
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains