MmuINT0179912 @ mm9
Intron Retention
Gene
ENSMUSG00000066829 | Zfp810
Description
zinc finger protein 810 [Source:MGI Symbol;Acc:MGI:2384563]
Coordinates
chr9:22109956-22112082:-
Coord C1 exon
chr9:22111993-22112082
Coord A exon
chr9:22110047-22111992
Coord C2 exon
chr9:22109956-22110046
Length
1946 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
TAACCTTGATTGTTTTGCAGATG
3' ss Score
9.07
Exon sequences
Seq C1 exon
AGCCGGTGTCCCAGGTTCGGGGGACTCTGTCGGTACCGGCACGGGTCTGCGCCGCGCAGCGAGGACGCGGGGTGTCTCGACTCCGCCATG
Seq A exon
GTGAGCGCGGCGTCCCCGCGGAGCCGGCGGCTGCAGAGTCCGAAGCCCGAGCCCTCCGCACCCCAGCTGTGGGGTGGGGGCTGGGCCCCCCGAGTGTCCTGTCGCGTCCCTGGTCCTCGCGTGGGGACTCGAGTCCCGCCGCTGTGCTCTCCCTGGCTGGGATACTGGAGCGCAGGTCACGGTCCTTGGACCGAAGTCCCCCGCGGGGTTTGGGGCTTGCGGCACATTCTTGCAACCAGCTGTTCTGAAAGGACTTGTGTCAGCTGGACAGTGCCAGCAACCGACCCCCCAGGTTACCTGGCCCCAGTGAAGGGTTGCCCCAGGATTTTCCTGGCCCCGCGACTCTGCACGACCCAGCCCCATCACCTTCAGCCCTGTATGCCCCTTGCTCTGTGGCTTGTTTCTGAATTTCAGGATCGCACTGAAGGGTGTTCTTAACTGTACTGATTTTAGTATTTAGTTTTTAACTGTACTGATTTTAGACGCTAGTCCCTTGATTTCTCACCTTTTCCCCTCAGGGCATGTATTTTCTTGGGTCCCGTTCTCTAGGGCATGGGTTGGAATCTGAGTACCTACCTATTCTCTGAATACCTTACGTTCTCTGTGATGGAGCCTAGGAAATGCATACTAGGGAAGTGGCTCTGTCGCCAGCCCAGCCCCCACAGAACAGGAATGTCAATGCCTTGGGCTGAGAATCTAGGTGTCCAGGTTTCTTCCCAGAGGCAAAAAAAGAATTGAAGACCTAGGGACCGAGAAAGTAGAGAAAGGTAAACCCCTCACCTCTGCAGAGGTGACAACAAGCATCTCTTGAAGCAGAAAGCCGCCTGGCAGGCGGAGGGGAGGGATGGATCTCCCTGAGCACATGAACCAGCACTCTGCTTCCCTGGCCGTCTTTCTTTCCCCACCTCTGTTTGCATTTCTCTGTTGGCTGTTCTATGAAGCCTAGAGCCAATAGCTCTCCTTGCTGCGACTCTCAACCCTAAGTAGAGATGGGATAGAGGCTCTCTGGACACTTTACTGAATGGTAAGTTGAGGCCAGGGAATGGTTCTAAGTATGAATGACTTCCTCAGTGCCTGTCACTGGTCAGCCAGGGTAGTCATAGAACTCAGAAGTTGGTGTCTACTAGACTCAAGGAGACTCCCAAAGGGATGGGAGAGACAGTGTTTGCCAATACCCCTATAGTCTCAGAGGATGAATGAAGAACTGAGGAGTCTGTAGGAGGGATGTAGGCCTGAGAAAGGGTGTGATGGAGGAAGGCAGGGTGTGATGGAGGAAATAAGGGCCTGAGGGAGGAGGTGAGGGCCTGAGGGTGGAAACCAGGACCTGAGAGAGGAGGTGACAATCTGAGGGAGGAGGCCAGAGCCTGAGGGAGGAGGCCAGGGCCTGAGGGAGGAAGTAAGGGTCTGAGGGAGAGGATGCCTCAATCTGAGAAAGAGTTGATGGAAAGGGATTTGAGGATGGGACAACTGAAAAGAGATCTGATCCTGAAGATCAGCTCTGAGGGAGGACTCAGGTTTGAGGAGATGTGAAGAGTGAAGGCAAAGACAGACCGGATAGAAAGGAGAAACCTTAAGGCAAATGGGAAGAGAAAGGAAGCCCCCCCCCCCCCTCTGCAGGACCCCTTCCTCTGGAGTCTGACGAAGTCTTGTCAGCTGAAGCTCAACTAGAATAAAGCTGTAAAGTTGCCAATGCAGTCTTACTTCTGTATTACAACACCTCCATTAAAAATCAGGTAACCAGCCGGGCGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGACTGCACAGAGAAACCCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCAGGTAACCTTGATTGTTTTGCAG
Seq C2 exon
ATGTAGACTCGAGTTTTCCTGGGAAATCCTCATGACATACTACTTCCAGAAGGCCCAAGGGAGGAACTCTATTCCCTGGAAGCTGGAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066829-Zfp810:NM_145612:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: