MmuINT0179975 @ mm9
Intron Retention
Gene
ENSMUSG00000058192 | Zfp846
Description
zinc finger protein 846 [Source:MGI Symbol;Acc:MGI:1924012]
Coordinates
chr9:20385772-20392367:+
Coord C1 exon
chr9:20385772-20386122
Coord A exon
chr9:20386123-20392278
Coord C2 exon
chr9:20392279-20392367
Length
6156 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
3' ss Seq
TTGACTTCTGTCTTTTCCAGGAA
3' ss Score
12.89
Exon sequences
Seq C1 exon
AGTGATGGCTGCGTCCTGTAGTTCTCAGTGTCTTCACCTCCGGTTCATCTTTACGTCTAGGAAGTCGCCGAGGCAAGGATGGGGGGTGACGGCGGCCGTGGAGGGTCAGTTTAAGGCGTGGCTGTGTGTGCAGCTCGCCGAGGGGCGGTCCCCGTAGGCCCGAAGCCTAGGACGGGCGGGTCTCACGGGCACCCCGCCTCCCTCTGGCGAATGCTCTCCAAGCTTCCATCTGCTCGCTCGCCCTCTGCAGAAGCCGCCTTCCAGATTCCTCTTCCAGCACAGAAGCCCGCCACGGGCCATCTCTCTGCAGCCGCCGCCTCCACTGCACAGCCCAGCGATTGTGGAGCTCGG
Seq A exon
GTGAGCGCCCCAGGCTGTGATTTGTTCCTTGCAGAGTGTGGCTTTGTCTTTGGCATCGTCTGATTAATTCTGCCACATGACATTCGGGTAGAAAAAGTATTCGTAGGTATCTAGGACTAAACATTTCTATTTGGAGGTCAATCTTTATTATTTGGCTTTTCCAGAACTCGCTAGGTAGACCAGGCTGACCTAAACTCCTGGAGATCCGCCTGCCTCTGCTGGCATTAAAGGCTTTTGCCACCGCCTGCTAAATGTTTATTTCCTTAATCTTAACCTTTTTTCATTTTCCATGCCTTTCCTTCCTCACTCTCTCCATTTCCTTTCTCTTTCTTCACCTCTCCTCCTCTTGACTTTACTGCTAGTAGAACTGCTCATTCAGTGAGCTACTAACCCTTGCCCTGAACATTTTATACATAAAGTACAGATACTGTGTGATTATGGCTTTCTACTGGTGAGAATGGGAGTACCCTGTTCTCTTTATTTGAAGTTTCCAGGCCTGTACATCCCTATAGAGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAGAAAAAGAAAAAAGAAAGAAAGAAAAAGAAAAAAAAGTGGGAATTACCCTGGCTCAGCTCAGAGATCAGTTCCCATGGGTTGGTCTTACTTTCCACCATCTGGGCGCTGGAGATCAGGCTCTCTGGCTTGGCCTTTACTCGCTGGTTCATCTCCATGGCCTCTGTTTTTTGTTTGTTTGTTTTTTGTTTTTGTTTTTTTAGAGACAGTGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAATCTGCCTGCCTCCGCCTCCGCCTCCGCCTCCGCCTCCGCCTCCGCCTCCGCCTCCGCCTCCGCCTCCGCCTCCGCCTCCGCCTCCCAAGTGCTGGGATTAAAAGCGTGCGTCACCACGCCCGGCTCCATGGCCTCTGTTTGTTCTCTGAAGTAGGGTCTCAGGTAGCCCAGGCTATCATACACCTTGCTATGTAATTGAGGCTGACTCTGAACTCCTAATTCCCCAGCCTTTACCTCCCAGGAGTTGGAATTTCTGGTGTCTAGCATCATGCCTGGTTCTATAGGTAACTTTTGAAGAGTCTCAAGTTCTTTAAGAAAGTCATGTTTTGCTATTTCTGAGTGAAATCAAACGTTATATTTAAAAATTAGTGTGTTCCCCTTCCCACTTACTCCCACATACTTAGAGTAGCTCCAAAGGAGAGGTTTGAAAGCTGCAGTAAGGATTGATAATAAGTAACATAGGCTTCGGGGCCACAGGGTCTAGAATTACTCAGTTCTACTTAGTAACTTTGTCCATGGTTATGCTGTGATGTTCTGGTCATGAGTGGCAGCTGTTTCTCGGAAGCAGGATAGTTATCTTAGTAAGAGGGCATAGTGCCTTGAGTGGGCTGTGTAGCTCAGCGGTTGTGGACTCATTGGCATTATGAGGCGCTCCAGTGGTAGAACACAAAAGGCTTCGGTTTGCTACAAAGTACCAAGAAGGCTAAGCCATTGCCTGGCTCTTGGATATCTTTGCATCTGCTGAGTGAGTCCAAGTGCTTGAAAACTTTGTATTATATGGTTTAAATTTTTTATTTACTGTTTCTGTATAGACATGTATGGTGGGTGTGGCTGTGGAGGTGGATCAGGTTCCTGGGTTTCTGTGACAGGCTCCCTTGCTTTCTGAGCTCCCTGCTACTGTAGTTGTAACTCTTTCTGGCCTGCGCTTGACTGTAGTGCAGTCGATGGCCCTGGAGATGGCTGTGTAGACTTGTTAATGCACATTCAAATCTTAAAAATGATGCACTCAAAATTCAAATATCTGTTCAGCGTGATGTCCCGTTTTGGTTGGCGTAACGGGCAGAAACTTGAATGAGATCTTCAATGAGTGTCTTTACATACCATCATTGAACCTTTAGAAAGACTTAGTCCTAAATCTCCAGTTGACATTTTTTTTTAACTATCCTTACATATTTGTGTGTGCACACAAAGATGTCACAACAGACATGTGGAGGTCAGAGGATGACTTGCAGTTCCATCCTGCGATTTTGAGTCCTGGGGAATTGAACTGAAATCAGCCATTACACTAGCCTATCTCCCATGGGGATGAGCCTTCTGCTCATTACAAAGTAGAATGGAGAAAATGACATTGACGTTGTCAGTCCATGCCATATTGAAGACCAGTTGAAGTTGTGTATGATAACAGAGGTCAATGGAAAGTAAGGCAGAGAGAATCATGAGGCTAGCCTGGGCTACATAATGATGTCTCAGACAAAACAACTGGTGTGACCACCTGCCTGTGTTTAGTTGCTGGTCATTTTACTTCAAGACTCAGGGAATTTTGCGCTGGCCGGTGAAACTTTCAGAAGTTTCGGTGCTGTAAGTCAGGTAAGGACAGTGGTAAACTATGCTGAGGCAGTCAGGAGCACGATGGTTATACCAAGTTTTTCATGTTGGTACTCGTGTTTAAACTTCTCAGGAGCACTTTTGTTATGTCTGGTTTATTGATCATGTGAGTAGAGACTTCCAAGACTTTTTCTTCCTCCAGACTCCCCCATATGCCCATCCTTGAGCTCTTTCAAATTTATTGCCTCTTGTTATATGCATGTGTAAACTTGTGTGGTGTCTTCAGCAATAGGGACTTTCTTCCACCTCTGAGGGGCAAGCGAGGGCAATAGCAACAGCCTGTGTGTTTTGCAAGTCTGTTGGACAGCCCAACCAACAACTCAAAAGAAGTCATTTCGTGCCTTTTGTTAGGTGGTCTTTGGTTCTTGCAGGGAGGATTGTCAGCCCAGATGAGAAATATAGTACAGCTAGTTTAAACTTATCTCCGACAAGCTTACAAATGAATGAGACTCAGACTATGGTTATTTTATCTGGCTTTGACAGATACTGGGGGTCACCCCTAATCTGTTTCTCTAGCTGCTGGCCTGGCTACATCCCCAGCGCTGTGCCCCAGATACCTGCTGTTTCTCCTGGCCATGTGCTCGTGGTCCATCTCCCCTCATGGCGCTTCCTCCTCTCTCTTCCTTGTTCTTCCTCCTTCTCCTTGAGCCTCCCACAACTAGATAACTCAAAACCGCCTACCTCTCATCCCTCCAGTAATTGGCTGTAGCCACTTTTATTTAACCAATAGTTTTAAATTAAGGAGCAAGGTTTGCACAACGAAAGCTGGCAAATGTGAGAATTCACGTGTAGGCCTAGACCTTTGGGTACAGAATTTAGCATTACAGTATGTAGCAGCAGGCCAATTTTTTTGAGATCTCAACAGAGAAATTTTCATTTTAGCTATATATGTACATGTGTATGTAGAGTTATGTGTATTACAGGATTTTTTTTTTTAGGTAAGTAGTTGATAGTATGATTCCTCATAACTTTTTCAGACAGCCTTACTGTTATTTTGCCCTCCTCTCTCCTTGTGTGTTTTCTTTCTCCCTCCTTTCTTTCTTTCTCTTCCATCTCTACCACTTACTTGCTCCTCTTAGTGGCACCTGGGGCCTCTGAGTATCTGGAGTCCTCTTAGGAAGTGGCACCAGGCCATATGCACAGTCTGCTCACCTGGACCTATGTGGCACCTGACTGGGAGTTGCCTCCCGTTCTCAGTCTTGCAGCATGTTCAAAGCCAGACCGAGCTACATGAGTCTTCGTCTCAATAGATAGATAGATAAATAAATAAATAAATAAGATTGATGTCCTGGAAGTGATTGGTTATACTTGTGGAAGTCACTACTATATTGTACAGTACAGGTCTAGGCTGACTTCTGATCATGTTGAGGCATGAATTACAACCACAGAAAATCAAAGCCATGGCTGCACGTACCTTTATCCCAGAACTTGGAAGACTGACGCAGGAGAATCTCTGGTTCTAAATTTAGAAACCAAAACATGACAGAAGATTAGAACTTTGCAACAACTTCCTGCATTCAATCTAAATTCACCACTATGTAACTATCGTATTAAAACAGTTACTTGTAGTGTCTAGACCTGTATTTCTATTATGTCTACTCTGGAGGGTTGGTAGGGGAATTAAATAAGTTTATATAGGACCATCAAGATGATTTAGCAGGTAAAGGCATTTGCCCCAAGCTAAATGACCTGGATTTAATTCCCCAGATCCTTGTGGTGAAGGAGAGAACCAAGTTAACCTCTGACCTGTACATGTATAAGATGGGCACTCCTCTGTACACAAAGGGCTGATATATAAATATATTGCATATGCATGCATTGGTGTTCAGTAAATGACAGTTATTGGTGTCTATTACAAGGTCACTGTCTTTAGTGTGCACTTTAGTGCTCTCATGTGTGATATTGAACTGCTGCTTCTTGATGATTGGTAGGAAAAGGCTCCTGTAAGCGCCACATAGGAGTGTAGTTTCTCTAGCCCTTGAGATACCTAAGCAAGGCTGCCTTAGCATGGAGAAAGGAGCATATGGGCAATTCCAGCTTCAGCATGGCAGCTGCCAGTGTGCACCATGGCCAGACCTGAACAGTCACACTGCCCTGCCTGGTTTACTTTAGGAGCGCTTGATAGACTAGTGAATGCTGGGGTTAGTTTTCTGTCGCTGTGATAAAGTGCCTGGCATTGGAGTAGGGCTAGGATCAGTGGGTAGGCTAGTTGCCTAGCATACCCAAAGACCCTGTTTCTATCCAGCACCACATAAGCCAGGTATAGTATGCACACTATAATTCCATGATTTGGAAGGTAGAGTCAGGAAGATGAGGAGTTCAAGTTTATCCTTGGCTACATATCAAGCTTGGGACCAGCTGGACTCCATGAGACCTTGTCTCAAAACAAAGAAAAACTTGACACCTCATCTTTAAAGGAAAAAAAAATCATTGCTCAGTGTTCCAGAGGTTTTAATCCAGGTTCAGCTGGCCACGATTCTGGGCCTGTGGTGAGGCAGAACGTCATGGTGGAAAGGTACCACAGAGCAGAGCTGCTCACCCCACAGCAGCCTGGAAGCAGGAACAGAGCAAGAGGAAGAACATAGAGAAAACACCATCTTCAGTGACCTTCCTCCATCTAGGTCCCACACCCTCAATTCTGCCACCTCACAATAGCACATTAAGTTATGTGTCCATCTATGGTTTAATCAATTGGTGATAGATGTCTCGATATCCAGTCCTCCCAAAGGCTGCACCTCTGAACACTGCTGCGTTACCAACCTGTCAGCACATGTGCTGGCTAGTTTTGTGTCAACTTGACACAGCTGGAGTTATCACAGAGAAACACATGAGCTTGTGAGAACAATTTCAATATGCAAAGCTTAATAGTATGGATTGTAAACCGGGCCGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGGAAAAAAAAAAAAAAAAAAAAAAAAAAAGTGTGTATTGTAAATAAGGCCCCTGGTATGTGTGTTTGAAAAAAGCACTCATGAGATATATTACTAGGGCAAATAAAAAAAATGTGTCACCTTTCCAACTTGAAGTTGTCTTCCCTATAAAATGAGACATTTTCCCCAGTGGATAGATAGCATGGTGAACCAGCCCAGTTTCTCGGCCTCGGTGAGACAGTGCTTTAGCAGCACACGTTTGTGCATATGCGTGAGTTTTCTCTGGTGTGTAGGATTACACGGATTTCACATTAGGGCTGTGTGATGGTTATTCATTGTCTACAGCTTCTAATATCACCTAGGGGACAGATCTCTGGGCACTCCTTTGAGGTACTCTCTGGAATAAGGTTAGCCTCTGAGAATGTCCATGAGGGATTATCTGGATTAGGATCCTGGACTGTATAAAAGGGAGAGTGAGGTGAACAATAGCTCCGGTGCTTTTGTGCTTTCTGATTGTGGCTGGGATGTGGCTTGAAGCTCCTTTACTGTCCTACCGTGATGGGGCTGCAACCTGAAGCTGAGAGCCAGAACAAGCCCTTTCTCCTTCACTTGCTTTTGTCACAGCAACAGGCAATCACAGCAACAGGAAAGGACACTGTGGAAGGCAGAAATGGCATCCTGGTATGTAAGAACTAAAAGCAACTCTGGTTTCTCTTGACTTCTGTCTTTTCCAG
Seq C2 exon
GAACTCTGTGTAGGGACTCAGACCCCATTCTTGAAAAAAAGAGGAAGGTAGAAAAGATGGTGGCTGATTGCCTGACAAATTGTTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058192-Zfp846:NM_172919:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: