MmuINT0179977 @ mm10
Intron Retention
Gene
ENSMUSG00000058192 | Zfp846
Description
zinc finger protein 846 [Source:MGI Symbol;Acc:MGI:1924012]
Coordinates
chr9:20588509-20589558:+
Coord C1 exon
chr9:20588509-20588635
Coord A exon
chr9:20588636-20589456
Coord C2 exon
chr9:20589457-20589558
Length
821 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TTTGTTTTGTTTTGAGACAGGAT
3' ss Score
3.77
Exon sequences
Seq C1 exon
GTCTCAGTAACTTTTGATGATGTGGCTGTGGACTTCACCCAAGAAGAATGGATTTTATTGGATCAAGCTCACAGAGACCTCTACAGAGAGGTGATGCTGGAGAACTACCAGAACCTGGCCTCAGCAG
Seq A exon
GTAAGACTGCCACCACTCTCTTATGGTTTCCAAGGGAGGGGAGGGTTGGTATATTCTGGTGTGCTGAAGGATCAGAACACAAGGAAAGTAAGAGGCACACAGACTTTGTCCTAAACCCATAACCTGTTTGTGGAAGATTCAAGAGATTAAAGGTTTCCAGTGGACACCTAAACTGTAGTTAGGACTTAACTGTATTATACAGTAGTAACTTTTTTGAGTTGCAGCAAAACTTGCATGAATTCCTTTTTCATGATTTCACAGATTTGAGGTTTGTTTATATTTTGGCATACAAGATCCAGTTGTAGTTGTATTGACCTTGAACTCCTGATCCTCCTGTCTCCACCTCCCAACTTCTGGGATTACAGATATGTACTTACTACAACATCTGGCTGGAGACTGCTTGAGAGTAGATATGAACACTGGACTGGAGAGGTGGCTCAGCAATAAAGAGCACTTGCTGATCTTGCAAAGGTTCCCTGCTCCAGAATAGCAGCTCATAACTGCCTATAATTCCACTTCAAGAGACCGGCTTCCTCTTCTGGTCTCTGGGGCACTGTATACACATAGACACATACACATGAAGGCAAAACACTCAAATAAGAAATGAAACATCTAAAAGTAGAGGTTATAGAGTTCCCTTCCACCCTTTTCCTTATTGTCTAGAACTATCAACTTTTTGCTAGGTGAAGCACTTTACATCTTGTCTTTACATATCTAAATTGTCATCATGACTACTATTTTGTTTTGAGGCCATTAGTAAAAATGAGGGCTATATGAGCACACTTGTTGCTATATTGGTTTTTTGTTTTGTTTTGAGACAG
Seq C2 exon
GATCTCACTCTGTAGCCACAGCTGAACTGGAACTCATTGTATAAATCAAGCTCCCTGAATTCACAGAAATCTGCTTCCCATGTGCAAGTGCTGGGATTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058192:ENSMUST00000140668:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAACTTTTGATGATGTGGCTGTGG
R:
TTCAATCCCAGCACTTGCACA
Band lengths:
222-1043
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types