MmuINT0180107 @ mm10
Intron Retention
Gene
ENSMUSG00000034949 | Zfr2
Description
zinc finger RNA binding protein 2 [Source:MGI Symbol;Acc:MGI:2143792]
Coordinates
chr10:81248390-81249078:+
Coord C1 exon
chr10:81248390-81248528
Coord A exon
chr10:81248529-81248983
Coord C2 exon
chr10:81248984-81249078
Length
455 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCAC
5' ss Score
4.22
3' ss Seq
TAGGATTCTATCCCTTCTAGGAC
3' ss Score
8.16
Exon sequences
Seq C1 exon
ATAGTGGCAGAAGACAAGTACGAGGTCTCATCTGACCATGACGCCAACATTGTTATCTCAGCCTGTGTGGAGCCTGGGGTGAAGGTCACCGTGTCTGCCACCTCACCTCTGATGCGGGAAGATCCCTCTGTAAAACAAG
Seq A exon
GTGCACCCCCAGCTCCCTGCCCTGAGCCTACACAGCACAGCACCCTGTTCTGGACAGAAAGGCCCTGGTAGTCATTGTATCTCTGGGTCACATGGGGTCACACAGTCTGGGGCGGTAGAGCTAAGGGCTGGTGTTTCAGGGCCTTTGCACATGCCTGGAAGGTCCTCTCCCACTGAACCACACCCCAGCTTGTGGAGGTTAGGGACAGGGTCTCTCAGTGTGACCAGGCCCCAGACCTGAGATCTACAAGGCCATCGATCACTTAGAACGCTGTAGGTGCTGCGTGGGGCATTGGCCTGTGATTCCAACATAGGGTGGGAGTGCGGGACTATGAGTCACAGGCCAGGGTGGAGCACAGAGGGGGACCTCGACTTAGTCAGGACAGCCAGCCTGAGCACAGCCACCCAATGGGACTGGGGATCAGCAGAAAGGGACTAGGATTCTATCCCTTCTAG
Seq C2 exon
GACAGCAAGACGCTCTGTCCGACCCAGAGGACGTCTTAGACCGGGAGAGGTGCCTTGAGACCCTGGCAGCCCTCCGCCATGCTAAGTGGTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034949:ENSMUST00000117798:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.279 A=NA C2=0.231
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(18.6=100)
A:
NA
C2:
PF075289=DZF=FE(12.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCAGAAGACAAGTACGAGG
R:
CTGGAACCACTTAGCATGGCG
Band lengths:
231-686
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types