RnoINT0168815 @ rn6
Intron Retention
Gene
ENSRNOG00000020416 | Zfr2
Description
zinc finger RNA binding protein 2 [Source:RGD Symbol;Acc:1304737]
Coordinates
chr7:11338147-11338808:-
Coord C1 exon
chr7:11338670-11338808
Coord A exon
chr7:11338242-11338669
Coord C2 exon
chr7:11338147-11338241
Length
428 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAC
5' ss Score
7.56
3' ss Seq
TTGGGCTCCATCCCTTCTAGAAC
3' ss Score
7.69
Exon sequences
Seq C1 exon
ATAGTGGCAGAGGACAAGTACGAGGTCTCATCTGACCATGACGCCAACATTGTTATCTCGGCCTGTGTGGAGCCTGGGGTGAAGGTCACCGTGTCTGCCACCTCACCTCTGATGCGGGAAGACCCTTCCGTAAAACAAG
Seq A exon
GTACACCCCCAACTCCCTGCCCTGAGCCTGCAAGGCACAGCAGGCTCACTCTGTTCTGGGCAAAAAGGCTTTGGTAGTCATGGTACCTGAGGGTCACACGGGGTCACACAGTGGAGCTGGGGCTGGTGTCTCAGGGCCTTCGCACAAGCCTGGAAGGTCTCCTCCCACTGAACCACAGCTCAGCTTGTGGAGGTTAGGGACAGGGTCTCTGAGATCTACAGTGCCATCGCTCACTTAGGAATGCTCTAGGTGCTGGGTGTGGCACCAGCCTGTAATTCCAGCACTGGGGTGGGGGTAGGGGACTATGAGTTAGAGGCCAGGGTGCAGTGCAGAGGGAGACCTTTTCTCAGTCAGGACAGACGGTCTGAGCACAGCCACCCTGTGGGGCTGGGGCTCAGCAGAAAGGACTTGGGCTCCATCCCTTCTAG
Seq C2 exon
AACTGCAAGACTCTCTGTCTGACCCAGAGGACATCCTGGACCGGGAGAGGTGCCTCGAGACCCTGGCAGCCCTCCGCCATGCAAAGTGGTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020416:ENSRNOT00000061132:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.213 A=NA C2=0.188
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(18.6=100)
A:
NA
C2:
PF075289=DZF=FE(12.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGCAGAGGACAAGTACGA
R:
CTGGAACCACTTTGCATGGCG
Band lengths:
232-660
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]