MmuINT0180359 @ mm9
Intron Retention
Gene
ENSMUSG00000021327 | Zkscan3
Description
zinc finger with KRAB and SCAN domains 3 [Source:MGI Symbol;Acc:MGI:1919989]
Coordinates
chr13:21478873-21485954:-
Coord C1 exon
chr13:21485831-21485954
Coord A exon
chr13:21480576-21485830
Coord C2 exon
chr13:21478873-21480575
Length
5255 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
TATTGGCATTTGTGTTTCAGATC
3' ss Score
9.34
Exon sequences
Seq C1 exon
GGGTTGCTGAAAATGGAAGATGTAGCCCCAGTCCTTTCCCCCAGATGGACAGAGCAGGATTCATCTCAGATGAACCTCTACAAAGATGGAATGCAGGAGCACTCTGGCAGCCTGGTTTCCCTGG
Seq A exon
GTAAGACTGATGAGTACTAATTTCTAATCAGGCTTCTTGCTATCTTTTACATAGTAGAACCTACTTCCCCATGAGGCTGTTGGAAGCTGTTGGGTTCATTATGTTTGAAACACTGTTATTGACAGCTCCTTCCTGCTTATAACTGGTTCTTTATCCTTTGTCTTAGTTAGGGTTTCTATTGCTATGACAAAACACTATAACCAAAAGCAACTTGGAGAAGAAAGGATTTATTTCAACTTACAGTTCCACACCATAGTCTACCATCAAAGGAAGTCAAGACAGGAACTCAAAGCAGGAGCCTGGAGGTAGAAACAAAAACTACAGAAGAGTACTGCTTACTGGCTTGCTCCTCATGGCCTAATCAGTCTGTTTTCTTGTGTACTTCAGGGACACTTGCTCAGGACTGGCACTGCCACAATGAGCTAGGTCTTCCCACATTGACAGTTAATCGAGGAAATGTCCCCACAAACTTGCCTACAGGCCAGTCTAATAGAGGAATCTTCTCAATTAAGATTCCTTCTTCCCAGGTAAGTCTAGGTTTTTGTCAAGTTGACAAGAACCAGTAGCATACACAGTGTTGCAGTGACAGCGAATGGGATAAAGCATAGAATCCCCTGTACTGTTCTGGCTGAGAGGAGATGCTCAGGGAATACTGAGTGCTGAAGGTGCACATCTCACAGGGACAGCACTCTTGCTGAGCATGCATGAAATCATGGCTTCAATGAACTGCAAAAAAAAAAGATCTTTTCCTTTCCCTTCCTGTTCCTATCCATGACTAGTAAAAAGACTGAGGAGCCTCTCCACAAGACATGGGTTATGGAATCAGGGTTAGAAGCAACATTAGACACCAGCCATAGGCCCTAACACTAAAGCAAGGACACAAAAGGTTACAAGATTTGTCAAATGTCACATGCTTGGTAGCATGGTAGGGCCTTCAGTTTTTCTCAGAGAATTGATGATCTCTTCTGGTGTGCCTGCCACTGCCAAGTCACAGTTTACCAGAACTACTTTTGTCTTTGTCCCAGTTGAGTTTCTATTCCTGCGACAAAACACCATGACCAAAAAGCACGTTAGGAGGGAAGGGTCGAATCAGCTTACATATCTACATTGCTGTTCATCACTGGAGGAAGTCAGGACAGGAACTCAAATAGAGCAAGACCCTGGAGGCAGGAACTGGCACAGAAGCCATGGAGGGTGGGCGTCAGGGGATCCTGCTTACTGACTTGCTTTCCATGGCTTACTCAGCCTGCTTTCTTATAGAACTCAGCCTGCCAGCCCAGGGATGGCACCACCCACAATGGGCTGGGCAGTCCCCCAACAATCACAAATTGGGAAAATGCCTTATAGCTGGATCTCATGGAGGCATTTCCTCAACTTAGGCTTCTTCCTCTCTGATGACACACAAACATATCACTATTAAGCTACAACCCTTCCTTTCTTATTCATTCCCAAGATATAACATTAAAATCTTTGTCTTGGTTAGGGTTTTACTGCTTTGAACAGACACCATGACCAAAGCAACTCTAATAAGGACAACATTAATTGGGGCTGGCTTACAGCTTCAGAGGTTCAGTCCATTAACATCAAGGTGGGAGCATGGCAGCATCCAGTCATGGTGCAGGAAAAGCTGAGAGTTTTACCTTGTCATCTGAAGGCTGCTAGGAGAAGACTGGCTCCCACAAGGTTAGAAGGAGATCTCAAAGCTCACACCCACAGTGACATACTTTCTCCCAAAAGGCCACATCTACTCCAACAAGGCCACACCTCCAAATAGTGCCATTCCTGGACAAACCATATCTAAACCTCCACACTCATGAATAACTTTAAAAATTGCAGTCTTTACATATTCAAACACATTAAATTAAAAGTCCAGGGGACTAGAGAGATAGATGGCTCAGCAGTTAAGACCACTGACAGCTTTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGCCTCACAACCATCTATAATGGGATCTGATGCCCTTTTCTGGAATGAAGCTGTACATGCAGGTAGACCACTCATATACATAAATAAATCTTTAAAAAATAAAATTAAGCCGGGCGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTTGAGGCCAGCTTGGTCTACAAAGTGAGTGCCAGGACAGCCAGAGCTACACACAGAGAAACCCTGTCTCGAAAAACCAAAAATAAAAAATAAAAAATAAAATTAAAAGTCCAAAGTCTTAGATGTGAGCACCAATAAAAAATCAAAATTAAATGAAATTCCTCCAAGCGGGAAGACAGGGGACAGAAACCATTTGCACCAGGCAAAACCAAACCAGCAGTATAAATAACTCAACATCCAATTATCTGGGATTTACTCAGTCTTCTGGGATCCTCCAGAAGGGCTTGAATCAGTTCTGTGGTTCTACCCTTTGCATCACTCACAACTTATCTTCTAGGCTCTAGCTGGCTCCATTCTACTGCTGCTGCTTTCTTGGTGATCATTCCATGGTACTGACATCTCCAAAATGTTCTTCTGTTGCAACTAGGCTGCACCTTCTCAAATAGCCTCTCATAGACTCTCTTCATGGTGCCAAGCTTCAAATTCTTTGCATGATCCCCTGGACCTTCAATTGCTACCAAGGCTGCACCTTCACCAATGGCCTGTCCTGGCCTCTCACAGTGCCGAGCCTCAGCTGTTCTCCATGACCCCTTCATGCCTTCAAAACCAGTACCACCTGGGTGACCCTTACACATTACCAAGTCCCGCTGCTAGCAATAAATACAACCTTAACCACCTCTGGAACATACCTTCTAAGTGCTGATTCTTAGAAAACACTTCCCAGAAGATGTCACCTCAGTGATGCTGGTCTCTTCTTAACCACTGCTAATTTCTCAGCTTCAGCTAACCAGCATCAATTGTCCCAGGAAAGCAAAGGTTTCACTTCAGTCGTGCTGGTCTCCTTTTAATTGTGGCTGACTCTTAAACCCCATCTGACCAGAATGGCAGAATCTTAATTCAAAATAACAAAATGGCCTATCACACTGAGCTCTCAACACTCAGTGGCTTTTCTAACTCAAAATTCTTCCACAATCCTCCCAAAAACATGGTCAGGTCTGTCAGAGCAATACCCCAAATCCTACTACCAATTTGCCTTATTTTCTTTCTATTGCTGCAATAAAACGCCATGACCAAAAAGCAAGTTGGGGAGGAAAGGGTTTACTCATCTTACAGTTCCACATTGCTGTTCATCACTGAAGGAAGTCAGGACAGGAACTCAAACAGCATAAGATCCTGGAGGCAAGAGCTGATACAGAAGCCATGGACAAAAGTAGCTTACTCAGGCTTGCTTCCCCTGGCTTGCTCAGCTGGCTCAGCCTACGTTCTTATAGAACCCAGGACTGACAGTCCAGGGATAGAACCACCCACAGTGGGCTGGGCCCTCCCCAATTGATCACTAATTGAGAAAATGTCATATAGCTGGATCTCCTAGAGTCATTTCCTTAACTGAGGCTGTTTCCTCTCATGACTTTAGCTGTGTCAAGTTGCCACAAAACCAACCAATACAATCTTTATCACAAACAGATGTGAACACTGCAGAATTCCTTTCAGAATTGCCCTGTTTTCTGTTGCTTCCTGTGTTCGGTCTTTCTTACATCTGTTCTAGTTTCTTTTCTGTTGCTGTAATAAATACTATATGACCCAAATGCTATGACTGCTTGAGGGAGTAAAGGGTTTATTTTTATCCCATAGTCTTTGATTGAAGGAAGTCCTTGCATGAACTCATACAGGAACCTGAGGGCACAGACTGAAGCAGAGGCCACTGAGAAATGCTAACTGGCCTGCTCCACTGTGGGGTGGGGTGCTTTCAGACCCTTATCCTAGCTCCCTGGAAGCCAGTATTCTGCTAGCAGCCTTCAGATGAACATGTAGAACTCTCAGCTCCTCCTACACCATGCCTGCCTGAATGCTGCCATGTTCCTGACTTGATAATGGACTGAACCTCTGAACCTGTAAGACAGCCCCAATTAAATGTTGTCCTTATAGGAGCTGCCTTGGTCCTTCGTGCCTCAGTAGCTCTTCTGCCTTGGTGTCTGTTCACAGCAGTAAAACCCTAAGACACTACCTGACTTTCTTCTACAATCAGGACTACCTGACCAGGGATGGCACCACTGATAATATGCTGGGTCCTCCCACATCAGTGATTAAACAAGAAAATGCCCCCCACAGACTTGCCACAGACCTACCAAATGGAAGAGATTCCTCAGTTGAGATACCCTTATAGTTTGTGTCAAATTGACAAAAAGTCACTAGCATAATTTAGTTGACTCTTGTCAAATACATCCATTATTAAACCATAACCTTTCCTTTCTTGTTTATACCCAAGGCCTTATGTTAATACTCCAACCTAAAACAGCATAATTTTATAAACGTCAAAGTCTTTTAAAAAAAAAACTCAACATTTTAAAATTTAGAATCTCTTTAACTTTTGGTTCCTGTGCAGTTAAGACCAAGTCAAGGGCTAGAGAGATGGTTCAGAAGTCAAGCACACTGGCTCTTCTTATAAAGGTCCTGACTTCAATTCCCAGCAACCAAACGGTGGCTTATAACCATCTGTAATGAGGTCTGGTGTTCTCTTCTTCCCGGCAGGCATATGTGCAGGCAGAACACTGTACACATAATTAATAAATAAATCTTTAAAAAAAAAAAAAAGAACAAGTCAAAAGATTTACTCCAAAAGGAAAGCACTGGGGCATAAAACCAATCACATTTAAGCAAAGCCAAAATCCAGCAGTATAGCTTCAAATCTTGTAATTCAGTATTCAAGATCTATGACTCGCTAATGACATTCTGGCCTCTGAAGGGCTTAGCTCTTTTTCTTTCCAGAAGAGAAAGTGAAGTATTTAATCTTAGGTACATGTCTTTGCTGCCTTCCTATTATTACACCTTCAGGGTTCCCCTACAACCTCACTGTGTATCCACAGGAATCCTTAGTTCTCACCAACCACTTTCTCTCCACTCCCATTATTCCTGGTTATGTCCTTCTTTCAACAACCCCATTTCTGCCTTCATGCCTCAGTAGCTCTTCTGTTATCCTCCTTTTTGTTCCATCCTGATTTCTACACTTAAATGCTTAATAACCTTGCTGAACACATAGACCTTTATGATTATTGTCTCTATGCTATTCATCACAGTGTTCCTATGCAAAGCATAATTAACAATTATTGGCATTTGTGTTTCAG
Seq C2 exon
ATCAGGACATGCAGACTAAGGTTAGGGACTTGCCTCGAGCTGAAGAATATAGGGACCAAAAGCCTGAGCAGACAGTGTGCTTCCTGGGTGAAGACACTGTCCCGATTCCTACAGGTGCAGAAGCCAGTGAGCAGGAAGGCAAGTTACAGGCAGCACAGAAGAGTGCCACAGGAACCAGGCGGTTCTATTGCCGTGAATGTGGGAAGAGCTTTGCTCAGAGTTCAGGCCTAAGTAAACACAAAAGAATCCACACTGGATTGAAACCCTATGAATGTGAGGAGTGTGGCAAAGCCTTCATTGGAAGCTCAGCTCTCATTATTCATCAGAGAGTTCACACTGGTGAGAAGCCATATGAGTGTGAAGAATGTGGTAAGGCCTTCAGTCACAGCTCAGATCTCATCAAACACCAGAGAACCCACACTGGGGAAAAGCCCTACGAGTGTGATGACTGTGGGAAAACCTTCACTCAGAGCTGCAGCCTCCTTGAACATCACAGAATTCACACTGGGGAGAAGCCATACCAGTGCAACATGTGTCCCAAAGCCTTTAGGCGTAGCTCACATCTTCTGAGACATCAGAGGACCCATACTGGGGATAAAGATTTTTTTGTTCCAGAACCTTACTGGGAAAGTCAGAGTAGGGTGGAAAGCCATTGGGAAAATATTGAAACTCCTGTGTCTTATCAATGTAATGATTGTGAGAGAAGTTTCAGTAGGATTACAAGCCTTATTGAACACCAAAAAGTACACACTGGTGAGAAGCCCTTTGAGTGCCAAACCTGTGGAAAAGGCTTCACCCGACCTTCATACCTTATTCAACATCAGAGAAGACACACGGGGAAGAAAACTTCTGTCACAGTGACCCCTGCTGTACATTCCGAAGTTGGTGTTCAACTGTCATTGAACTGAAGCCACTCTGTAGTTCTTAATGACTGCAGAAGTCATAGGCTGGGGCTCTATTTGATAATGTACATTCTCAGATATTAGGAATCTGGCTAAGACTTATCTTCTACATTCTAGAAGGTGACTAGGAAAAAAAAATTAATTTCATAGAAGAGTTGTCTACAAGAGTCCTCACCCATTGGAACTAAATGGGCTTCCTGACTGTCAAATTGCCTTCCCTTGTCCTGCACTTCATATCTCTTGAGGGAATGGTTATGCTTTGGGGGTGTTGCTCTGATCCTTCATTAGGCTATTGGGCCCTTCACATGTGGTCAGACTTGGAACTCTTATGTCCTGCTTTGTGCCTTGTATACAGGTGCTAATAGACATTTATTAAATATACTGGTGAGATTTCCTACATAGCTCTAAAAACCCATTATCTGGAAATTCTCACCAAAACCATTTGTATATCTTTTTAAAAAAAATGATGTTTTAGATTGAATCAATGTAGAACTGCTTTGTTTTTGTTTTTTGCCAAGTACCCCAACTTGGCAGGGCAGAGGTGAAGGTGAGGTTACTGTGCTAAAATCCTTTAATCCTTTACCTAATTTAGGAATTCTGTGAGAGTGCCTTAAACAGCTTTCTTAGCATTAAATCATTGTGAATGTGCCACCCATGGAATTCCACTAATATTTTTTTTCTTGTTAATTTTGTTACTCTTGAGAGAACAAAAAAAAAAAAAAAAGAAAGAAAAAAAAACCTTTCCTACTCATGTAGTGTGAAAATGAGTTTCAGAATAAAGTGATCAATGTCTAAGGCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021327-Zkscan3:NM_023685:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.544 A=NA C2=0.206
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PU(95.0=90.5)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=8.3),PF134651=zf-H2C2_2=WD(100=8.6),PF0013017=C1_1=WD(100=18.8),PF134651=zf-H2C2_2=WD(100=8.6),PF134651=zf-H2C2_2=WD(100=8.6),PF134651=zf-H2C2_2=WD(100=17.2),PF134651=zf-H2C2_2=WD(100=8.6)
Main Inclusion Isoform:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: