BtaINT0164638 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003575 | ZKSCAN4
Description
zinc finger with KRAB and SCAN domains 4 [Source:HGNC Symbol;Acc:HGNC:13854]
Coordinates
chr23:30186451-30188695:-
Coord C1 exon
chr23:30188572-30188695
Coord A exon
chr23:30187311-30188571
Coord C2 exon
chr23:30186451-30187310
Length
1261 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
GCTGGCCGTTTGTTGTTCAGGTG
3' ss Score
8.38
Exon sequences
Seq C1 exon
GGGCCATTTAAAATGGAAGATGTGGCACTGACTGTTTCCCCTGGATGGACACAGCTGGATTCATCTCAGGTGAACTTGTATGGAGATAAAAGGCAAGAGAACCATGGCAGCCTGACCTCCTTGG
Seq A exon
GTAAGACTTATGGACATTGATTTCTTCTAAGATTTCCTGGCTTCCTTTGTATATTAGCATCTACTAGGCTATTAGAAGCTGTATGAATTATGTTTAGCATTAGAACCACCATGTCTGAATCCCAACTACTAACTGGCTATGTGACTAGTTTATTAATCCTTCTGAGCCTTGCTTTTTCTAAAAAAAAATGTATTTACCTATTAATATTTGGCTGTGCCTAGTCTTTGTTGTGGCATGTGGGATCCTTAGTTGCAGCATATGAACTCTTTAGTTGCAGCGTGGGAACTCTTAGGGCATGTGGGACCTAGTTCCCTGACCAGAGACTCAACCTAGGCCCCCAGCATTGGGAGCATGGAGCCTTAGCCACTGAACCACTAGGGAAGTCCATGACCCTTGCATTTTTATCTGTACTGCCAGTGTTCTGGTCAGTTTAGGTGGGATGAAGTAGGTACAACCTCTAGTTTAGATCTAGCTCATAGTAGATGCTCAGTAAATGCTGATTTCTTCCCCTTCCCTTCCTGTTGCTAGCCCTGACAGGAGAGGAGAGCTGAGGGGTCTCTTCAGGAAATGGACCATGGAACCATAGGGCGAGAGCTAGAAGTGATCTAGAGACTGACTGCAGAGCCTGGCCTTAGAGATGAGGATGCGGTGCAGAGACACACAAGATTGCCTGGCTTGTCTGAGTTCACACAGCTCATTGGCAGCACAGTAGGGGCTCCAACTCAGATCTCCCAGCACTGATGCCAGTTTTACTTGGTGGACCCTGCCACTGCCTGGGTTCCAGCCAGAAATGACTGTACCTTCCAGTGGTCACTGAATTCTGAGTTCCTGCTTTCCCTGTTTCTCACAGAACATTTCAGAAATTCTTTTACTTGCCTTGTTTACTCACCCCCTGCTCAGCCCTTTTAGTGTCTAACCCCAAGCACATGGCCCTGCCTTACTTTCATGGCCCTTCTTACTTTACAGAATTTAGAGCCTCTGTGTGTATCCCCAGCACAGTCCTCGGTACTTCTCACCACCTTCCCTCCAGTCTCTCCTTTCCCAGGTTGCACCCTTCTTCCAACAGCCCCATTCTCATTCTCAGGTCTCTCTCCTCCCCAGCATCCCTGTTCTCCCCCTTTATTCCCATCTGCATTCTAATACTTACATCCTCATCCTTGCCATATACAGACCTTTGTAACTCTTGCCTCCCTGGGACTCATCACAAAGCTTTCCTCTATGGCAGGACATAACTGACAGTTGCTGGCCGTTTGTTGTTCAG
Seq C2 exon
GTGGTGTGGTGCAACCGAAGATCAGAGAGCTGCCTCCAGATGAGGATCATCCAACACAGGAGCCCGGGCAGATACCATGCCACCTGGGTAAAGCCACTGGCCAGATTCCTGCTTGTGCAGAAGCTGGTGAACAGGAGGGCAGGTTACAAAGAAAGAAAACTGCCGCAGGAAACAGGCGGCACTATTGCCATGAATGTGGAAAGACTTTTGCTCAGAGTTCAGGCCTGACTAAGCACAGGAGAATCCACACTGGGGAGAAACCCTATGAATGTGAGGACTGTGGCAAGACCTTCATTGGAAGCTCTGCTCTCGTCATTCATCAGAGAGTTCACACTGGTGAGAAGCCATATGAATGTGAAGAATGTGGCAAGGTCTTCAGTCACAGTTCAAACCTTATCAAACACCAGAGAACTCACACTGGGGAGAAGCCCTACGAGTGTGATGACTGTGGGAAAACATTTAGCCAGAGCTGCAGCCTCCTTGAACATCACAAAATCCATACCGGGGAGAAGCCTTACCAGTGCAACATGTGTGGTAAAGCCTTTAGGCGGAATTCACATCTTCTGAGACATCAGAGGATCCACGGCAATAAAAACCTTCAGAATCCTGACCCTGGACGGACCTGGGAGAGTCAGGGGAGGAAGGAAAGCCAGTGGGAAAATGTTGAGGTTCCTGTGTCTTATAAATGTAATGAGTGTGAGAGAAGTTTCACTAGGAATAGAAGCCTAATTGAGCATCAAAAGATCCACACGGGTGAGAAACCCTTTCAGTGTGATACATGTGGAAAAGGCTTCACCCGAACTTCATACCTTATTCAACATCAGAGAAGCCATGTTGGGAAAAAAATTCTATCTCCGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003575:ENSBTAT00000004651:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.690 A=NA C2=0.353
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.2)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=9.1),PF0013017=C1_1=WD(100=20.6),PF134651=zf-H2C2_2=WD(100=9.1),PF134651=zf-H2C2_2=WD(100=9.1),PF134651=zf-H2C2_2=WD(100=9.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTTTCCCCTGGATGGACA
R:
CCAGTGTGGATTCTCCTGTGC
Band lengths:
347-1608
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]