RnoINT0169029 @ rn6
Intron Retention
Gene
ENSRNOG00000051823 | Zkscan4
Description
zinc finger with KRAB and SCAN domains 4 [Source:RGD Symbol;Acc:1309004]
Coordinates
chr17:45148646-45152436:-
Coord C1 exon
chr17:45152280-45152436
Coord A exon
chr17:45149515-45152279
Coord C2 exon
chr17:45148646-45149514
Length
2765 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
TGCTGACAATTGTGTTTTAGGTC
3' ss Score
9.7
Exon sequences
Seq C1 exon
GTCCCAACTGGGGAATGGAGTCGAGAACTTCTCTGCTGCAAGGTGGCATTGGTGACATCATCCCAGGATTCACAAAGTAGTCACTCCCAGGCAATGAAGTCTCTCTTCAAGCATGAATCTCAGGAATCTTTGGAGTGTTCACCCTTACAAGCCAGAG
Seq A exon
GTGAGCATGTTTCTGAGAATGTTTCTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGGGGGGGGGAGGCAAGGGAGAGATGGATAGAGGGAAAGAGGGGGGAATAGAGGAAAACACGCACACACATACACACATTACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAATATTGAGAGATTGATCGATCTCCAATTCAGGTCCTTGCACATGCTGAGAACACTACAACAGCAATAAAATGGTGACTATGACAGTGTTTCCTTTACAGTTCTGCACCGTCATTATAATTTTACACCAGTCTCAGAGTTCCTCATCACTTCCTAGCCACAGCAGTCTTTGTTTGTGGTTCACTTAAGAGGCCTGGAGGATTCTGTGTTCTCAGACCCCTTCTAACCCATTGCTTTGCTCAGGCCCTTTATTGGTGGTTTTGTTTGTTTTGGTTTTTTGAAGTACAATTCAGGAAATGCAAATTAAAGTTGTTTTTTTTTTTTTTTGGTAATAATATTAGTTTGGGTGTTTTGGGCAATGTTAGGGTTCCCGCAGAGGGCTTCGTCCATACTAGGCAAGTACTCTGCCACCATGCTACCACTAAACCCTTATTTTGTCATCTTAAATTATAATAAAGTACACTCTCAGTGATGGACATAAACACCAGGCTTCTGCCCTCAAAGACTTATAGTTGAAGGGGACAGATACAGCCTGTCATTAATGTGATGATGATATATCCTGGATTTTCATATTCATTCAGTTTTTCATTTCATGCTTGAAGTCATCAGTGTTTGGTGTGCTAATAATATTCTTTACTTTTCTCCTGATTTTTTTCTGACCCAAGACCCAGGTTTTATTTTATTTAAAAAAAGTCTAATTCAATGAGCCCTCATATTGAGTTTGACAATGCAAATCTTTGGAAGTTTGGAAACTTGTTTTCTAAGCCTTTTCACGTCCTAGACCATTATATATCATGGGAAGGGACTTACTCTCATATGTGTAGTTGTTTTGACTATTCATATATTCATACAAATGCCTTAATGTGTGCCATATTTCTTACCTTTGAGAGTTTGTTTTTGAGACAAGGTCTCTCAGTATAGCCCAGGCTTGACATGAACTGAGATCTTCATTGTTTAAACTCTCAGGTGCTTGGATTATGAGCATGTACCACAGTGCCTGGTTAGAGCTTTGTCTAAGTGGAGGTATGCCTTAAGACTCTTTAAACTGTTCACACGTACCTCAGTTTGAGAGTAGGAGACGGAGGTCCTAGTGGGATTAGCTGTTTTAGGAGTTCCTGACCCTGTCACCTGGGTTGGAAGAGCAGATTCATCTCAGAGGAACCTCTGTAGAGATGAAAGTTTTCCTATTTTAGCTCTGCTGTCCTAGTTTCCTTAGAAAAACCTGGCAGGTACTATCTGCTCTCAACATCTTTTCCTTTGTGTATTAGAAGAGTTTGCTGTGTGTCTGGTTTCAGAGTTACCATGTTGGAGTCCTGTTAGTGACCAGTCGTTTAAATAACTCTTAAAACCCCTTGACCATTGCTTTGTTTTCTACCCTGCCAGTGTTCTGGTAAGTTTAAGTGAGATGAAGCAGATTCAGTCCTTTCAGGAAGAGTCCTATTCACCTAAATTTTCAGTAAATGTTGTTTCCTTTTCATTCTGTTACCCTGTCATGGAAGGGAGGCTGGGAACACTTCAGGAAGTGGGCCACAAAGGAGACTCTGGGAATCCAGAAGTGCGCTTAGATGCACTATAATCCCTAACCTTAAGGGCAAGTGACAAGTCACAGAGGGTAATGTGGCTTATCAGAAGTATAGACTTCTTTGACAGCACCTCCAACATAGCGGCCCTTGTCAGTGATTGCAGGGAACACCATCTCTGACTGGAATAAGAAGAGCAGGGGCCAGGGCATAACACTGACTGGCCATGAATTCCTGTGAGTTACTTACTGCCTTAGTTTCTTATGACATGTTCCAGAAATACTTTTACTTGTGGTTCGTGTTGCTTTTGTCCAACCTTTCTTATCTAATCTTAGGCTTACATCTCAGCCTTCCTATTCTTAGGGACCATCCACCCATCACAGCACCTGCTTTCCTTTAGGCTTCTGCCTAAAGCCGCTCTAGAGAAGAGAGACATACAGAAATATTTTTAAGAGTCTACTGTTTCTAGACAGTTAACAGGACTTGTAAAGTACAAAAATTTATACTTTTCATGTTTTATTAAATGGTTTTTAGGAACTTTTATGTTGATCGGTTGGCCATTATGGATCATGGTCTTGGTCCTCACCTTTCCCCCACTTCCTTGTTTTCCATTTAATCCGGATTCCCATCAGGTTTCTTTCCTCACCAGCGTCCCTGTTGTTCCATTTATTTCCACACTTATTCCTGCATTTAAATATTTGTCCTTGGGATGCAGAGAGCTCTGTAAATAACATTTGCCTTCTTGCCGTGTTCCTCAGAGCTTTCTCCTTGCAAAGCAATAGTAACACTTGCTGACAATTGTGTTTTAGGTCTGGAAATGAAGCCTGAGACCAGGGGCTTGCCTCTAGCTGAGGAATACAAGGTTTCTTTCCTCACCAGCGTCCCTGTTGTTCCATTTATTTCCACACTTATTCCTGCATTTAAATATTTGTCCTTGGGATGCAGAGAGCTCTGTAAATAACATTTGCCTTCTTGCCGTGTTCCTCAGAGCTTTCTCCTTGCAAAGCAATAGTAACACTTGCTGACAATTGTGTTTTAG
Seq C2 exon
GTCTGGAAATGAAGCCTGAGACCAGGGGCTTGCCTCTAGCTGAGGAATACAAGGAACAAAAGCCTGAGCAGACAGTGTGGTTCCTGGGTGAAGACACTGTCCAGATTTCTACAAGTACAGAAGCCAGTGAGCAGGAAGGCAAGTTACAGACAACACAGAAGAATGCCACGGGAAACAGGCGGTTCTACTGCCATGAATGTGGGAAGAGCTTTGCTCAGAGTTCAGGCCTGACCAAACACAAGAGAATCCACACTGGAGAGAAACCCTATGAATGTGAAGACTGTGGGAAGACCTTTATTGGGAGCTCTGCTCTTGTCATTCATCAGAGAGTTCACACTGGTGAGAAGCCATATGAGTGTGAAGAATGTGGCAAAGTCTTCAGTCACAGCTCAAACCTCATCAAGCACCAGAGAACCCACACTGGAGAAAAGCCTTATGAGTGTGATGACTGTGGGAAAACCTTCACTCAGAGCTGTAGCCTCCTGGAACACCATAAAATTCACACTGGTGAGAAGCCATTCCAATGCAACTTGTGTGGCAAAGCCTTTAGGCGTAGCTCCCATCTCCTGAGACATCAACGGATCCATGGTGATAAAGCTGCTCCGAAGCTTCTTCATGGAGAGACCTGGGAAGGTCAGAGTAGGGTGGCAAGCCTGGGGGATATTGTTGAAGCTCCTGAGACTTATCAGTGCAATGAGTGTGAGAGAAGTTTCACTCGGAGTAGAAGTCTTATTGAACATAAAAAAATTCACACTGGTGAGAAACCCTACCAGTGTGATGCATGTGGGAAAGGCTTTACCCGAACTTCATACCTTGTTCAACATCGAAGAAGCCATGTGGGAAAAAAGTTGTCTCACAGTGACCTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051823:ENSRNOT00000084976:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.321 A=NA C2=0.197
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=8.6),PF134651=zf-H2C2_2=WD(100=9.0),PF134651=zf-H2C2_2=WD(100=9.0),PF134651=zf-H2C2_2=WD(100=9.0),PF134651=zf-H2C2_2=WD(100=9.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]