BtaINT0164636 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003575 | ZKSCAN4
Description
zinc finger with KRAB and SCAN domains 4 [Source:HGNC Symbol;Acc:HGNC:13854]
Coordinates
chr23:30190489-30191914:-
Coord C1 exon
chr23:30191773-30191914
Coord A exon
chr23:30190572-30191772
Coord C2 exon
chr23:30190489-30190571
Length
1201 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CAAAGTGCTTTCCTTCTCAGTTC
3' ss Score
7.02
Exon sequences
Seq C1 exon
GTCCTAGGTGGTGGCCAGGAGCAAGAACTGCTCTGTTGCAAGATGGCAGTGTTGACACCCATTCAGAGGCCACAAAATATCCAGTTCCAGCCAGTGAAGGCTCTGCTCAAGCGTGAATCTCTGGGATCCATTCCAGACAGAG
Seq A exon
GTGAGTGTTATCTTCTGGGCAGTATGAATTCTACAGACTTCACCCAGTTTCACTTAAGGATCCCCTAAAGGACAGATTTGTGGATAAGTGCTTTATATGCCCATCACAGATCTACTTCTCTTTGAGACTGAGACCAGTAGGGAAATTTCAAACAATAGTGGAAAGCTTTCCTAATCAAAACTGGACATGATAAATAAGACTTTATTAAAATTGGTGTTTGGAAAGAGTTGATTTTTTTTAGCAACACAGTTATCTCCGTTCATTCAACATATATTTCTGGAGGCTCCCTATGTGGTAGCCAGTATTGGTGTTGTGGGTATCAGGAATAGCATGGTCCACAGCATAGATTTCTTCCTCCTGTGGAGCTTACATTCTAGTAAGAAGAATAGCAAATAAATTAATAATACACTTTCAGATATTGGTGAGTGCTATGAGGAACATAAAACAGAATGTGTAAAGCCTGTCAGAATATTCCAGAATCGTAGGACTTGTGCAAATCAAAGAGTGTAAATCTTCAAAACCTGTCACTAGAACAGGGTGAAAAATCACTCAGTAGGAAACTGCTATATTTTCCTGAGTGTTCCCCATGTGCTGTGAACATTTGGGCAGATTTCCAAGGCAAATAACACTGGGATATGCCAGCCAACATGAAATCTTTATTTCTCAAAAGAGATCCTAGCCTAACCTATTTTCTGCCTCCTGCCAAGTTCACCTTTTATAGGAAAACCTGAAGTTCCCCTTTACTTCTCTTGAATCTGAGCAAGTTCTATATAAGCAGATTCCTATTTCCTTCTTTCTGGGCTCAGCCTAATCTGACTCTTCTTAGTCTTTTATAATAGAACTTAAGAAAAAAAGTACTCTAAGCTTCTAAATAAATTTTAGCAAAAACAAATATCCTCTTATCCACTCTTTCCAGAATGTTCAAGATGAAAGACTCTTTAGATGGAATGCTTTGTTTTGCCTTTATGCTGCTTCCATTTCTTACCAAGGATCTGCCCACCAATTCTGTGCCTCTATGGAGCACACCACATCTCTTTAGGTCTAAGGATTTGAGCTGGCCAGGATCAGGAATTTTGGAAAGGCACACATGCTATATAAACTTCTTTGTGGCAATTTATCTATGCAGTTTTTGAACTTGGATTCCACAGAGCAGGAAGGCTGAATGCCGGGTAGATCTCATCCAAAGTGCTTTCCTTCTCAG
Seq C2 exon
TTCTCCAGGTTCCAAGGCTTGCCCCTGGGGGGCGCTGCAGAGAAGATGCCGTGATAGCCACCAGGTTCGCCCCAGGGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003575:ENSBTAT00000004651:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.073 A=NA C2=0.179
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTAGGTGGTGGCCAGG
R:
GGGCGAACCTGGTGGCTATC
Band lengths:
214-1415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]