HsaINT0185872 @ hg38
Intron Retention
Gene
ENSG00000187626 | ZKSCAN4
Description
zinc finger with KRAB and SCAN domains 4 [Source:HGNC Symbol;Acc:HGNC:13854]
Coordinates
chr6:28248067-28249834:-
Coord C1 exon
chr6:28249687-28249834
Coord A exon
chr6:28248150-28249686
Coord C2 exon
chr6:28248067-28248149
Length
1537 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
AGAGCTTCTTTCTTTCTTAGTTC
3' ss Score
6.64
Exon sequences
Seq C1 exon
GTTCCCGTTGGTGACCAGGGGCAAGAACTGCTCTGTTGCAAGATGGCACTATTGACACAAACTCAAGGGTCTCAAAGTAGCCAGTGCCAGCCAATGAAGGCTCTGTTCAAGCATGAATCTCTGGGATCCCAGCCCTTACACGATAGAG
Seq A exon
GTGAGTATTCTCTTCTGGGTTGTATGAATTCTATAGACTTCATCCAATTTCATTTAAGGATCACCTAAAAGATCCATTTACAGTTACTTTATATACTCATCACAGAGAGCTGTATTTTAAGACTGAGACTAAGAGAAATTTCAAACAATGGTGAAAAACTTTCCTAACCAAACTAGGACATAGTAAATCTGATTTTATTAAAATTGATGTCTAGAAAGAATCGGTTTTTTAAACAACATGGTGATCTCCATTCATTAGATATATTTAGGGAGCCTTCATCTATGGTAGCCAGTGTTGTAGGCACTGGGGAGAGAGCCACCAATAAGACAGAATTCTTGCTTTGATGGAGCTTACATTCTAGCAGGGAGGATAGAAAATAAATTAATAATATAATTTTAGATATTGTTAAGTGCTATGAAGAAAATAAGGCAGAATTTGTAAAGCCAGCCAGAACATTCCAGAGATAGTAGGACTGCTGCAAATAGAAGAGTGTAAATCTAAACCCTGTAAAGCCTGTGACTAGAAGAGTGAAAATCACTTAATAGGAAGCAGCTGTGTGTTCCATGCTGTTCCTCATCTGCTGTGAACATCTGGGCCGATTCCTAAGACATACAACACTTGGACATGCCATCCAACATGCAATCTTTATTTCTCAGCAGAGTTTCTGGCCTAAACCAACTTATTTTCTGCCCCTTGCAAATTGACTTATTGTAGGGAAACCTAAGGTTTCTTCTGCTTCTGAGTCTGAGCAAGTTCTATTTAAGCAGTCTTCCAGTCTTCCATTGCCTCCTTTCTGGACCCAGCCTTATTTGACTCCTCCTAGTTTTTCTTTTTCTTTTTTCTTTTTTTTTTTTTTTTTTGAGATGGGGGTCTCACTCTGTTATCCAGGCTGGAGTGCAGTGGTGAGACCTTGTCTCACTGCAACCTGTCTCCCAGGCTCAAGCAATCCTCCCACCTCAGCCTCCTGAGTAGCTGGGAGCACAGGCCCATGCCACTACACCTGCTAATTTTTTGTAATTTTGGTTCAGACAGGTTTCTCCAGGTTGCCCAGGATGGTCTCGAATTCCGGAACTCAGGCAACCCACCTGTCTCAGCCTCCCAAAGTGCTGCGATTACAGGGATGAGCCACTGTGCCTGGCCTCCTCCTAGTTTTTCATACCTGAAGTGGAAAGCATCCTAATATCTACTAAAGACATTTTAACCAAAACAAAACAAAAACAAAAAACCCTCTTTACTCCCCATCTCCTAGCAAAATTCAAAACCCAAAGGTCTTCAAATGGAAAGCTTTGTTATGTTGCATTCATTTCACCACTCCTACCAACGATTCTGCACGTGGTTTTTGTATATCTGCAGAGTGCACCAGACTTCTTTCGGCCCTAGGGCTGGAGCTGGTGGGAATCAGGCATTTTTGAAAGGAACACATTCTGTATAAACTTATTGGCAAGAACTTACTGCCCCAGTTTTTGAACTTGGATTTTGCAAGGTGGGGAGGCTGAATACTAGGGTAGTTCTCATCCAGAGCTTCTTTCTTTCTTAG
Seq C2 exon
TTCTCCAGGTTCCTGGGCTTGCCCAGGGAGGGTGCTGCAGAGAAGATGCAATGGTAGCTTCCAGGCTCACTCCAGGGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187626:ENST00000377294:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.074 A=NA C2=0.179
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCCGTTGGTGACCAGG
R:
CTGGGACCCTGGAGTGAGC
Band lengths:
231-1768
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains