MmuINT0180361 @ mm9
Intron Retention
Gene
ENSMUSG00000054931 | Zkscan4
Description
zinc finger with KRAB and SCAN domains 4 [Source:MGI Symbol;Acc:MGI:3649412]
Coordinates
chr13:21573143-21577374:+
Coord C1 exon
chr13:21573143-21573299
Coord A exon
chr13:21573300-21575736
Coord C2 exon
chr13:21575737-21577374
Length
2437 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
TGCTGACAATTGTGTTTCAGGGC
3' ss Score
8.6
Exon sequences
Seq C1 exon
GTTTCAACGGGAGAATGGAGTCGCGAACTTCTCTGCTGCAAGGTGGCAGTGGTGACACCATCCCAGGACTCACAAAGTAGCCACTGCCAGGCAATGAAGTCACTCTTCAAGCACGAATCTCAGGAATCTTTGGAGTGTTCGCCCTTACAGGCCAGAG
Seq A exon
GTGAGCATATATCTGTGAGTGAGTATGTTTCTGTGTGTGTGGGGGGGGGGTGGTGGTGGCAAAGGAGGGATGGGTAGAAGGAAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTAGCCAATTCAGGGCCTTGCACATGCTAAGAGAGCAATAGAACCGCAATAGAACGGTGGTGAAGACAGCATTTTTCTCTACAGTTCTCCACCGTCTTCCTAATTTTACACCAGACTCAGAGTTTCTCATCATTTCCAGCAGCACCAGTCTTCATTTGGGGTTCACGTAAGAGGCCCTTTCTGTTCTCTGGCTGCCTTGAAGGATTCTCTGTGCTCTCTGACCCTTTCTAACCCAGTGCTTTGCTCAGGCCCTTTATTGATGGTGGTTTGTTTGTTTGTTTTTGCGTGTATTTTTTGAAGTACAATTCAAGAAATGCAAATTAATGGGTTTTTTTTCGTTTGTTTTTTGTTTTTTTGGTAATAATGTTAGTTTAGGTGTTTTCTTTTGTTTGTTTTGGGCAATGTTAGGGTTCCTGCTGAGGGCTTCATCCATGCTAGGCAAGCATTCTGCCACCAAGCTACCACCAAACTCTTATTTTGTCATCTTAAATTATAATAAAGTATACTCTCAGTGAAGGACATAAACACCAGGCTTCTGCCCTCAAAGACTTAGAGTTGCAGAGGACAGATATAGCCTGCCATTTTGGGGAATTAATGTGATGATTACATAACCTGGATTTTCACATTCATTCAGTCTTTCATTTCTTGCTTGAAGTCCTCAGTGTTTGGTGTTATAATAATATTTTTACTTTTTCTCCTGATTTTTTTCTCACCTAAGACCCAGGTTTTATTTTATTAAACAAAAAATCTAATTCAATGGGCCTTCACTTTGAGTTTGACAATGTAAATCTTTGGAAATTTGGAAACTTTTTTTCCAAGCCTTTTCATGTCCTGGACCAGTTATATATCATGTGATAATACTTACTGTCATACATGTAGTGACATGAACTGAGATCTTCATTGTTTAGACTCTCGGGTGCTTGGATTACAGGCATGTACCACAGTGCCTGGTTAGAGTTTTGTGTAAGTGGAGGAATATCTTTAGACACTTTACCTCCCTTCAAGAGCCCCTTTAAACAGTTTGCATGTGCCTTTGCATGTACCTCAGTTTGAGAGTATGAGATGCAGGTCCTAGTGGGATTAGCTGTTTTAGGGGCTACTGACTCTCTCACCTGGGTGGGAAGAACAGATTCATCTCAGAGGGATCTATGTAGGGATGAAAGGCAGGTATCCTAGTTTCCTTAGAAAAACCTGGCAGGCACTGTCTGCTCCCGAAGTCTTTTCCTTTGTGTGTTAGAAGCTACCTGACTCACAGAAGCAGTTTGCTGTGTGCCTGGTTTCAGAATGACCACGCTGGAGTCCTGTTAGTGACGGTTGTTTAAGTTTTAAAACCTTCTGACTGTCACTTTGTTCTCTATGCTGCCAGTGTTCTGGTCGGTTTAAATGAGATGAAGCATATTCAATCCTTAGGATTTGTTCACATAAATGCTCAGTGAATGTTGCCCCCTTTCTATTCTGTACGCTGGCAGGGATGGGAGGCTGGGCCACAAAGCAGAATCTGGAAGTCTAGAAGTGAGCTTAGATGCTGCCTATAGTCCCTGACCTTAGAGGAGAGTAACAAGTCACAGAGGGTAATGTGGCTTATCAGAAGCCACAGAATTCTTTAACGTAGAACCCCCTTGTCAGCTGTTGTAGGGAACACTGTCTGCCTGGAATAAGAAGAGCAGGGGGCCAGTGCATAACGCTGACTGGCCATGAATTTCTGCGAGTCCTTATTTCCTTAGTTTCCTATAACATGGTTCAGAAATACTTTTACTTGCTGTTTGGGTTGCTTTTGTCCAACCTTTCCTGTCTAATCTTAGGCTTACATCTCAGCCTTCCTGTTCTTAGGGACTGCGCACCCATCATAGTGCCCCCACCCCCGCCTTTTCTTTAGATGCCTGCCTAAAGTCTCTCTAGAGAAAAGAGGTATCCAGGAAATATTTTTAGATCCTACTATTCTAGATAGTGAAAAGGACTTATAAGGTACAAAAACCAAGTAAACCTTTCCTGTTTTATTAAATGGTTTTTAGGGATTTTTGTGTTGACTGGCTGGCCATTGTGGATCCTGGTCTTGGTCCTTACCTCCCCTCCCCCACACTTCCTGTTTTTCCATTTAATCCTGATTCACATCAGTTTTTTTTTTTTTCCCTCACCAGCATCCCCATTGTTCCATTTATTCACGCACTTATTCCTGCATTTAAATATTTGTTCTTGGGATGCAGAGAGCTCTGTAACATTTGCTCCTTGCCATGTTTCTCAGAGCTTTCTTCCTTGCAAAGCATAATAAACGCTTGCTGACAATTGTGTTTCAG
Seq C2 exon
GGCTGGAAATGAAGCCTGAGACCAGGGACTTGCCTCGAGCTGAAGAATACAGGGACCAAAAGCCTGAGCAGACAGTGTGCTTCCTGGGTGAAGACACTGTCCCGATTCCTACAGGTGCAGAAGCCAGTGAGCAGGAAGGCAAGTTACAGACAGCACAGAAGAGTGCCACAGGAACCAGGCGGCACTTTTGCTGTGAATGTGGGAAGAGCTTTGCTCAGAGTTCAGGCTTGACCAAACACAAGAGAATCCACACAGGAGAGAAGCCCTATGAATGTGAAGACTGTGGGAAGACCTTTATTGGGAGCTCTGCCCTTGTCATTCATCAGAGAGTTCACACTGGGGAGAAGCCATATGAGTGTGAAGAATGTGGCAAAGTCTTCAGTCACAGCTCCAACCTCATCAAGCACCAGAGAACCCACACTGGGGAAAAGCCCTACGAGTGTGATGACTGTGGGAAAACCTTCACTCAGAGCTGCAGCCTCCTTGAACATCACAAAATTCACACTGGGGAGAAGCCATTCCAGTGCAACTTGTGTGGCAAAGCCTTTAGGCGTAGCTCACATCTCCTGAGACATCAGCGGATCCATGGTGATAAAACTGCTCCAAAGCCTCTGCATGGAGAGGCCTGGGAAGGTCAGAGTCCGGTGGCAGGCCAGGGGGAAGATGTTGAAGCTCCTGAGACTTACCAGTGCAGTGAGTGTGAGAGAAGTTTCACTCGGAGGAGAAGCCTTCTTGAACATAAAAAAATCCACACGGGTGAGAAACCCTACCAGTGTGATGCATGCGGGAAGGGCTTTACCCGAACTTCATACCTTGCTCAACATCAGAGGAGCCACGTGGGGAAAAAATTGTCTCACAGTGATCTGTAGCACACCTGCTGGGGTTGGTGAGCACTTGCCAGTGAGCGGAAGACACCTGGAGCCCTTACTAACTGCAGAAGAGAGGGTGTGGCCAATACACACTGTCCAGAATTAGATGTTATAGTTTGAGGTGGATAATCTTTCCTGCTTAAAAAGTAACTGGAATGAGACTTACTAATTGAGGATATGGAGGTGGTCTCTGGATGAGATCGCACTGAAGTGTTCCCACCATTTGGATTTACAAGGACTTCCAGAACCGTCACTCGTAGCCAGCAGTTTTCTCCTGAATGGATGGTTCCGGATTTTGGAGTGTCCCTTCTTTACTCTTTGTCAATCGGAATCTTTTATGTCTAGTCAGATTCCTGCGGTCTTAGCTACCCTATTGTGCCTTGTGCATGGGTGCTAGAAAACCTTTACTCCAGGGACTGATGAAATGTTCTTCAACACTGAAAATCTGGGTCTAGCTTTCTGAAGAAGTTCTAACGAGGACCATTTGTGTTTGCATCTAATTGGCTAAGGTTCTAGAGTCTGGGGCAGCCCTACAGTTTTCATATTAAGTACACAGTGTTACAGAGTTTGAGTAGAGAGATTCCATTTATCTTTATGCGGATAGAGAATATGATGAAGAATGCCTCCAGCAACTTCTGAAGATGTAGGGAGACATTCCTGTCCTAAAAACCTCCATTAGAACATACTTAGTTGTTGTTGTTGTTTTTTTTAACCTTTTACTGTGAAAGTTTAACTGAAAATAAAAGGCAATCTTATTTTCATGAGATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054931-Zkscan4:NM_001039115:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.208 A=NA C2=0.329
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=8.6),PF134651=zf-H2C2_2=WD(100=9.0),PF134651=zf-H2C2_2=WD(100=9.0),PF134651=zf-H2C2_2=WD(100=9.0),PF134651=zf-H2C2_2=WD(100=9.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: