MmuINT1002041 @ mm10
Intron Retention
Gene
ENSMUSG00000026882 | 4930568D16Rik
Description
RIKEN cDNA 4930568D16 gene [Source:MGI Symbol;Acc:MGI:1923109]
Coordinates
chr2:35362320-35364789:-
Coord C1 exon
chr2:35364754-35364789
Coord A exon
chr2:35362368-35364753
Coord C2 exon
chr2:35362320-35362367
Length
2386 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
AGTCTTCTCTTTGTTCCTAGGAA
3' ss Score
9.61
Exon sequences
Seq C1 exon
AACAAAGGATCACCTACAGAAGATGTATGCCTGCTG
Seq A exon
GTAAGAGTCCGTCTGTGACCGTCCTAAGAAGTGTGGAGGGAAAAGTGCCTGCAGCAAATGGGTTTCTAGTAGAGATGCTGTACACAGAAGTGTGCTTTGGCCATTGACGTCAATGCAAGCATCCCCGTTCGGGACAGTGATTGCTTGGGTTTCTCTAGATGGATAGCTCCCTCCCTGAGAGCAGCCTGGTTTCCACACACAAGACGATGACCTCATCTTTTCACTTTACAGATTCTTTGCATACGTATCGCGGCTTCCAGCTTTGTGTTTTCATGAGATTCCTATGTATGTAAACATGTCTCCCTGTTTATACATGTTTCTTCTGCCTTTTCTTTCACTCTTTTTCTTCTGTTTGCTTGCTTTGTCCTAGTCTGATTTGGATGTTTGTTTGTTTGTTTGTTTGTTTGATCTTACTATTATTCTTTACATGCCTACCTGTTTTCTAACCAGAGACAGAAAGGGTGTGGATCTAGATGGGAGGGGAGGTGGGAGGAACTCAGAGGAGTTAGGGGAGAGGAAACTGTAGTCAGAATATATTGTTGAGGGAAAAAAATCTATTTGGGGGTGGGCAGGGCAGGCTGTGTTTGTTTGGTTTGGGGTTTTCTAGGCAGGGTTTCTCTGTGTAGCCTTGGCTGTCCTGGAACTCACTCTGTAGAGCAGGACAGCCTTGAACTCAGAGATCCACCTGTATCTGCTTCCTAAGTGCTAGGATTAAAGATGTGCACCACCACAACCAGCCTAAAAAATCTATTTTAAATAAAAGAAAAAAATCTCAAGACAATGTTGCTCAAAAATATAGACAGTTAACTTGATGTAAAACAAAACAAAACAAACCCCCATAAACAAAAGCAAACGTCTCTGTCTGTCAGTACACAGTTTAATGAATTTAGGCACAGATAATGTGGATGTAGAAAGAGAACCGGGGGAACCATACAGTGAAATATCTTTGGCTAGAGATACTTCTGAAAATTAAGAGATGCACTCTTTTTTACCTTCCACTTTATTTTCTTTTTACCTTCCACTTTATTTCAAAATAATAACCACTCACAGGAAGTTGCCTGCACCTTTCGCCTGACATTTCACCCGATGCTCCCTAATGTTACAGCTCCCACGACGGAACTCAAAGTCAGGGACCTGACACTGAGACAAGGTGCCTGTATAATTTTACCTTTTTATCACATGTCAATACTACTACAACCACAGCACCAATCAAGATATACTACTTTTCCATTACAGCCCAAACTATCCTGTTTGGTGCCATGTGATGCTTCCTGTTGTACCCCTCACTTCATCCTGGGAACCACTTCTAGGCATTTTTCTATCTCCATCATCTTGTCATCTTGAGACTTTTCTAAACAGGGTCATAAAATACATAACCTACTGATAAGAGGTGTTGTCGTACAGCAAGATGCCCTTGACAGCCAAGTACATTGTGTTTACTAACATTCTAGACCATGTTACTGATATGTAGTATTTCATATATGAACACAGCAGAATTTGTCAGACAGATTTTAGTGTAGAGTTATATATTTCAAAACCTAGTCTAAGGAGGGTACTCAAATGCTTTAACCTTCCTTCTAGCCCACCACCGACCAGAGGGAGTGGAAAGGAAAGGTTAATAGGGCAAAGGAGGATGTAGACTTGGCTAGAAATAGTTCTTTGGGTTGCATCCAAACTTTGTTGTCAGGATATCAGCAGCTCAGTTTACACACAGTAGCTCGATCCACGGGCAAACATCATTCTCGAGTCAGCAATGGCAGTTCTATCCAGAAGAAACATCTGTCAATCAGCTCAAATCCTTGGAAGCATCAAGGAGCCTCCAGAACACCACCAGAAGCTCTTTGGTGCTTTTCTCTCTGTGAGGTAATGACAAACGTTGATCAGCAAAGAGTGGCAAGGCGAACCAATACCACTCAGCATTGCCCAACTGTCTGATAAGTTACATTTATACCCTTTCCAAACATCCTGTGTTCTCTCAAGTGTCCACTCTAGCAAAACATCACATGCCCCCTTTCCAGGCACTTTCCAGAAAAACACCACGTGTCTGTTTTCAACAAAACGTCCTCCCATGTCTGCTTCAGCAAAAACATCCTCTTATAAGACAGTTTCCAGAAAAATATCACATGACACAACTGAGTCTCCAAAGAAACCAGAAATTTCATTTTAGCTAACAGGTTTTTTTTTTTAATTACTTAAGTGATCTGAGTTATATCTATTCCCCCTACCACTGTTGAACCCACCCACTGAGTTATTTCTATCCCCATTCAATACTATTGATAAGATTTCCTATTTCTGTTTCTTTGCATCAAACTATGCCCATGGTATCATACATTCAGCAATCTATTGAGTGGATGACCCCTGAGGTGAGTCTTCTCTTTGTTCCTAG
Seq C2 exon
GAAAGATCACTTAGAAGAACCTCATCTCTCCACCTGGTTTGATCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026882:ENSMUST00000028243:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF034148=Glyco_transf_6=FE(3.9=100)
A:
NA
C2:
PF034148=Glyco_transf_6=FE(5.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types