MmuINT1003481 @ mm10
Intron Retention
Gene
ENSMUSG00000024130 | Abca3
Description
ATP-binding cassette, sub-family A (ABC1), member 3 [Source:MGI Symbol;Acc:MGI:1351617]
Coordinates
chr17:24402265-24405153:+
Coord C1 exon
chr17:24402265-24402437
Coord A exon
chr17:24402438-24405024
Coord C2 exon
chr17:24405025-24405153
Length
2587 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
AGTCTTTATCTTCTAATCAGGCA
3' ss Score
6.07
Exon sequences
Seq C1 exon
ACATCCAGTACCAGGAGAGCTTCTATGCCTGGAGCACCCCAGGCGTGGGCAAGTTTGTGACTTCCATGGCTGCCTCAGGGGGCATCTACCTCACCCTGCTGTTCCTCATTGAGACCAACCTGCTGTGGCGACTGAGAACCTTCATCTGTGCCTTCCGGAGGAGGTGGACTCTG
Seq A exon
GTGAGTGGGTCCTGGAAGCTCAGGAATGCTGGAAGGTGCACCCCACATCCTCCATGGCCCTGGGATAGTGAAGGACTGCCTCCCAGTGAGCCCAGCCTTGAAGCTTAGTCACTCCTCCCATTTGTCACACTGCCTCATGGCTGATATAAAGTGTTGCTGCAGCATGGCCAGATCCAAGTACACGCCCACAGCACAGGGGGGAGTTGCAGCATTCAATATTTTCAAGGTCTGCCAAAGGCCTGAGATCCTGATGCTGTAGCAGCCTGAGGCCATATGCAGAGGCAGTTCCTGAGTCATTTGAGGTACCCACTTGTTATCACATACACATATATCCATTGTTTTAAAGATTTGTTTATTTTATGTATGCAAGTACACCGTAGCTGTACAGATGGTTGTGAACCTTCATGTGGTTGTTGGGAATTAAATTTTAGGACCTCTGCTCACTCCAGTCGGCCCTGCTCACTCAGTCCCTGATTGCTCTGGCCTAAGTATACTGTAGCTGACTTCAGACACACCAAAAGAGGGCATCAGATCTCATTATGGGTGTTTGTGAGCCACCATGTGGTTTCTGGGATTTGAACTCAGGACCTTTGGAAGAGCAGTCCGTGCTCTTAACCGCTGAGCCATCTCTTCAGCCTACATATATCCATTTTAATTAATTAACATGTACATATGTCAATGTGCAGGTCAGAAGACAATTTCTGGAAATTGACTGTCCTTCTTCCATGTGGCTGTTAGGGCTGGCAGCAGGCGTCTTCACCCCCTGAGTCACCTCACTACCACACACACTCATTTTTTCATATATACCCATGGCTCATTTCCTCCCTCACATAAACAAACAAGAACAAAGACTGTTGGAATCGTATTGGGTATCCAGATTAACCTGAATTGAATGGACTCCTCAGAAACATTTCAGCTCCTCCCAAATAAGTTCTCTCCATGTCAGTCTTCCCGGTCAGATGCAGTGGTACATACATACAGTCTCGGCTACTCAGGAAGATAAGGCAGGGGCATTAGTCGAGCTCAGTAGTGAGACTAGCCTGGATAACATAGCAACACACATCTCTTTAAAGAAAATGAAATAATGACCTGGCAAGACGTTTCAAAGGAGCCAGGCAGTGGTGGCGCACACCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTTTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAGAAAGAAAGAAAGAAGATGTTTCAAAGGGTAAAGTGCTCGCCACACAAGCCTTCAAGTTGAGTTTGTTGAATTTGATCCCTGGAACTCATGCTGAAAGGCAGAACCAAGTCCTAAGAGCTGGGAAAATGGCTACCTGGCAGTTAAGGATGCATTCTGCTCTCATAATGAACCCCAGCTCAGTGTCTGCCACCTGCCTTAGATGTCTAACAACCAAGTACCCATAATGCTAGCTGTGGGGGTATCTGACCCCTCAGACTTCTGTGGGCTCCTCACTCATGCGTGCATGCACACACAATAAAATTTTAACTTAAAAAAAGAAGCCAAGGGCTGGAGAGATGGCTCAGGGTTAAGTTAAGAGCATTGACTGTTCTAGAGGTTCTGGGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATTAGTAAGAGATCTGATGCCCTGTTCTGGTGAGTCTGAAGACAGAAACACTGTGCTGATACATAAAATAAGTGAATCTAAAAACAAACAAACAAACAAACAAAAACCTGAGCAGTGGTGGCGCACACCTTTAGTCCCAACACTTGTGAGGCAGAGGCAGGTGGATCTCTATGAGTTCAAGGCCAGCTTGGTCTACAGAGTAAATTCCAGGACAGCCAGGACTACACAAAATTTCTGTGTAAATAAATAAATAAGAAAGAGAAAAGAAACAAAAAGCAAAGCAAAGCGGCCTGGGAGATACTCTGGTGGGGCTCAGCACTTGTTGCTTGTCCAGAGGACCCGGCGTCAGTCATCGGCACGTGTGAGCTGGCTCACGGCTGACTGTAACTTTCTTTCCAAGGGATCCATCTCCCTCTTTTGACCTCCACAGACAATGCACTCATGCAGTGCATGGATATACATGAAAGCAAAACAAAACCCATACATATAAAATACCATTTTAAAAACTATTTTTAAAAAATCTGCCTGTAACTCCAGTTCCATGGGATTCAGTGCTCGCTTTTCCACAGACAGGAGGCATGCACATGGTACATACATGTAAGCAAAACAACCATACACAAAAGTAAAATTGTACAACTGTTTTCTTCACATCCCTCAGTGTATGATCGTCTCCTTGAGTTCCACACAGTTCTTGTGCTATTGCCTCTCTCCCTAGACGCTGAGTTCAGCCCCTAAGACCACCTGCTTCTTGTGAAAGAGTGGGTGGGGACGGAGGGGTGAGAAGGCCCATCAAATTTCCTTTTCATCCTGGGCTCCTGGCCTACTTCCATGAGCTGGAATCCACTTGTGTAGTCTTTATCTTCTAATCAG
Seq C2 exon
GCAGAACTGCAGAACCGGACATCAGTGCTGCCCGAGGACCAGGATGTAGCTGAGGAGAGGAGCCGAATCCTGGTCCCTAGCTTGGACTCCATGCTCGACACACCACTGATCATCAACGAGCTCTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024130:ENSMUST00000039013:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.023
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(11.4=60.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types