MmuINT1007172 @ mm10
Intron Retention
Gene
ENSMUSG00000031492 | Chrnb3
Description
cholinergic receptor, nicotinic, beta polypeptide 3 [Source:MGI Symbol;Acc:MGI:106212]
Coordinates
chr8:27386782-27393409:+
Coord C1 exon
chr8:27386782-27386826
Coord A exon
chr8:27386827-27393299
Coord C2 exon
chr8:27393300-27393409
Length
6473 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TGCATACCCATTTCACACAGGAA
3' ss Score
6.02
Exon sequences
Seq C1 exon
GATGAAAAGAATCAGCTGATGACAACAAACGTGTGGCTGAAGCAG
Seq A exon
GTGAGGACCAGTTCCAGGCTGTGTGTGCCAGCCAGCCCAGGCTGTGACCAGTCCCAGGCTGTGTGTGCCAGCCAGCCCAGGCTGTGACCAGTCCCAGGCTGTGTGTGCCAGCCAGCCCAGGCTGCACTGACATTTGCTTTCTATTTACACACGCTGCCATCTGGAAGTTCTCTAGAAACCATGCTGGATTCCTTAAGGCAGGACTTAGGAATGCAAGGGAATGGTCTATTTTAACTTCAGGTGTGATCACAGCAGAGCAGCCCTGTTACTGTGTGGGTATGCATCTTCCCGTGGCGCTGTTTCTCAGGGGTGGGGCAGCATGGGGCAGCGGTGACACTGGACAGATGGTGACCAATAATGACTTTGAGAGTCTGCTAAGTGACGGGTATTGTGCAAGATCTTAGGCGACTAGGGAAGATAAAACCCAGCCCTGTCTTCAAGGAGACAGGAGAGGGCTAGTTACTGTAAGGTGATGAACATCATTAGTAAGTTTGTATAAGGCTTGTGATTACATGAAGTTACCACAGAGATGGGGGGAAAGTCAGGGAATGCTCGAAAGAAGAGCAGATGTCTCACATGGGTGTCAAGGTCAAACACAAGTCCCACAAACCAGGTAGGAGTGGGTTTTGTGAACCACATGAACAGTCTCCCCAATCATTCTCATGACTTCACAGTGCTCTCTCACACCTAAGCAAACCAATGGAAACTCTTCCCAAACATTCCGGCACACCTTAAGAAAAACGAAGACTAAAGCACTCAGTTCTCTCCCTTTCTCCTTTGCTTCCCGTACTAGCCAATGAGGGCTCCTCCCAACCACTGACCTGTACAAAGCATAACTGTCACACGCACAGGGCTCCCTCTAGCTGGACCTATTTTTATTCTATTGATTTTATTTTGCAGACTTGTTTGTCTTTCTTCTTTGAACTCTCAGAACGTAATCAAATCCCCCGGGACCATAAATATCTTATCAGCAGACTTGCTGAAACCACACGAGGAAGGGCAATGTCATGACCCCTTAGATTCTGCACCACCGTGTTCAAGGTCCAAATGCATTTCCATCCATTCACCCTTCTTTATTGCTTCCCAGCCCCTTCCCACACACTACTCCACCACCCTCTCCCTGCCCTGCCCCACCAGCCACGCCCTGACACCTCATCCATCCCATTTCAGCTGTAAGCATTGTCTCCTCAGAATGCCCACACCATCTCTTTTCCCAGCACCATCTGCAGCTGGTGTGAGTTAGTCTCTGAGAGTTCACAGTTCTGGGGACCACCACTGCACTCAGTACCACTTAACAGGGCATATTCTGTGATACAATGAAATCCCAAGCAAAGTAAGTTCTGGCAGCTGCTTAGTTTTACATCTCTATCTGCCCCCCCCTTGCCCCCATTGATCTTGCTGCTGGAGGGCAGAAAGTAAGAACAATTATTCTGACTTAGAAATACTCCCCTGGGGGCTCGCCTCAGTTCCCTTTGAACAGCGTTTCTGAAATGCTTTCATCCTTTACCCTTTTTTTTATTCAAGAAAATTTAGGGGGTTCTTAGACAAACCCACATTAGCAAGCTGAGAATCTGTTAGTATTCATGGTCTGGAGGGGTGAAAGTGAAGACTTTACATATAGCTTCATTCAGGTCACAGGAGCAGCGTCAGACTTTGCTCTTGGCTTTGAGACAAGATAGTTCAGTGGCCACAAACTCATGACCCTTCTGCTCCCCGAGTGTTGGGATTATAGGCTTGGACCACCATGCCTAGTATGATTTTATTTTGAGTCTGATAATTTTCCCCCTTTGTCTCTAAACAATTTTCTCTGAAGATATTGTTTACCATCCATCTTGTAGTTCAGTTTAGTCTGTTCCTTGTCCCTGGGACAAAAATCTGTTCCCCGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGGAGAAGAGAAGAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAAGAGGTTGATAAGTGCCAATAAAACTCTTTTCTGGAGAGCAAGTGCATTTTGTAGATGATAAAAATGCTTATTGAGTCAGGACAAATAAAGGCAGAACACACTTAAATCAACAGATTACTGAAATGACTGAGTTCCACCTGAATCATACTGTTTAGAAATAGTAGAATTATCAAGTTTTACCAGCCAGTTTATATGTTAAAGTTTGACCTAAAGCTCATGGTACATAAAAAGAGGGCTCAACTGGTCACTTGGCGGGCTTTGGGCTTACAAGTTTTTAATTCTGTAAGTCTTTTCATAAAGTTTTAATTTTAAAAGTTTTTCATGTTTTATCTTTCCCATTCCTCAACTCAAGTTGTACACACAGCTAACTGTTTTTCATCGTAGAGACACCTACATCTCTCTTTACTTTTGAGTCAATAAGGTAGTCTAAAATATTGTTGCTTTGAAAGACCTTAGTTTCTGAAGTAGTCAAAGGTACTGCAAATTCAGCACAAGACATACAAGTTTAGTAAATAGAAGAGCAGAGTGGAGCAGTATTTTGTTGTTGTTTGTTTTTCAAGACAGTGTTTCTTTGTGTAACCCTGGCTGTCCTGGAACTAGCTCTGTAGACTAGGTTGGCCTAAAATTCACAGTGATCTGCCTGCTTCTACCTCCTGAGTGCTGGAATTAAAGACATGTACCACCATTGGCCGGGCCAACAAAGTATTTTAAAGAAAGCCTTATTCATTGGGCTGGAGAGATGGCTCAGTGATTAAATGTGCTTGCTACTCTTACACATCAGCCAGGTCTCTTCCGGCCTCTGTGGGCACCTGCATATGTGTGGCATACACTATAGACACACACAGAAGTAAACATATAACTCTTTTAAAAAAGAAAGCCATGTTGCTTTAGGCACAAACTGGTTTCTAATAACATCAGTCTATGAAAATTTGACTACAGAAAATCTTTTAGGTACATTTACATTCAAATCCCTTTCAACATTATTTAAACCTAGACAAAACTTATTTTATATTTTTAGATTAAATACTTCATAGCTTTATGATTTAAAACACAGTGTACATTCTATTTTTTTGCCAAATCCCTTCTCTTCATATAGGATCCAGCATATTCAGCAGAAGTTTAGGTTTGTAAGAAAGCAACTCCTCATGAAGACTCAAGGATAAAGCAATCTTCAATTCTTGCTCTTCCTGCTGGTAGCTTACAAGAGCACATTTGCGAGCAGCCCCAAATATCTTGCAGAAGAGCTAAATCTAAATTATTTTTTGATGGGATGTAACAGATTAAGGTCACCTGTCCACATGGCTAAACATGAAAAGCATAATGAAGCCTTAATCGCATAGGAGCAACTTTGGGTTTTAGATAAACCAGAGCTCCTCCAACCCCCACCCCTAGTTCTAGAGTTAACTCTTAGGTGCCTGCATTTGAGCGAAGCCTGGCTTATAGAGAGACCTTGAATAACTGCTTTAAAGTTTTAGAAGAGGTAGTGGCACATGAGGGACAGGAGAGTCTTAGCCAGCGGTGCCGCACTGACTATCTCACCCTCAGCAGATCCAGGCAGAGCGGGGAATTTTATTGTGAACAGACTTCTCAGTGACCAACGAGGGGAAAGTAAAGAGAAGCAAATAAAAAATGTCAATGTGCGTGAACATTTCTGAGACTCGGACTCTCTGATGATTCTGAGAGTCTCTCAGAAGGACGCAAAGCAGTCACAAGGACGGAGTTGTGTGTGCTCTTACAAGTGGAGTTAAGGAAACAGAGAGAATCTCAAGAATGCTGAGAAAATCTTATAAATGCTTTAATTAGTCTGGCTTTTAAGTAGCTAGTCTTCTAAGCAGGCCTTCTCACAGTTATACAGTATTTTAACTATTTCAGATTCTAAATTGCCAAAGGCCATGTCTCCCTTGTTTAAAGAAGAGAGATGTCACGTTTGCTGAGATCCTACTATTTATCAGGAGCTTCAAGTTTATTTATTTATTTTTTTAAATTTTTTATTAGGTATTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATACCCACCCACCCCCACTCCCCTACCCACCCACTACCCCTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAATTTTGCGTGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCGGGGTATTTTATTTTATTTTATCTTTTTAAAATTTATTTTATATATGTGAGGACATTGTCACTGTCTTCAGACACACCAGAAGACAACATCAGATCCCATTTTAGCTGGTTGTGAGCCACCATGTGGTTGCTAGAATTGAACTCAGGACCTATGGAAAAGCAACCAGTGCTGTTAACTGCTGAGCCATCTCTCCAGCCCTTATTTTTTAAAAATAATACTTTAATTTATTCTTTGAAGACTTCCTATAGGAGCCTTATGTCTTGGTCATATCCACTGTTCACTTCCCACTTCAACTCTGGCCTTCCCCGCACACACGACCTCTTTGAGATATATATAGTCACTGAATCCAATTACTATTGCCTACATTTGCACTGTATCGGGCCATCCACTGGGGCATAAGCAATGTACCATAGCCATACTGAAAAGAAGAGAAAAGTTTCTTTTCTTCCTCCAGCAGCCATCAACTGCCAATGACTCCCCACCTCCCCCAGCTAGGAGTAGAACCTCAATGGCTCCTCCCCCTCCCACCCTAGAACTTTGTTTAAAGATAACAAACCAGTATTTGTTTAAGCAACACACAGAAGAAAATGCCAGATATAACTGGACATGTGTCCCTTGTGCCCCAAATAAATCCATATAAGCTGCAAAAATAACAGGAAATAATACAAAAGACAGTGTTACATCAGCTTTCTACACCAAACCATGCCTTCATTTCTTTGACTACATTAAATCCAAAGCAAAATATTATAGGTTTATGCTCTGAGAAATTCATACTTGTGTACAGTGTATTTGATTTATATTCATTTTCCATTTCCCCACCCTTTGCAGGATCCCCTGACTCAGTGTATGTTTTTATTCTTATAGCCTTTTTGTTTTCTATAACCCTGAGTCTGATTAGTGGTACCTGTGTATCTATATTATAGACATGGGTGTAGGGCTATCCACTGGAGCAAGGCTGGCCTACTAGGAACTGTACCCCTAAAGAAAACAGATTCTTTGTCCCTTAGCAGCCATCACTGTCATTAACTACTGAGGTGGGGTGGGAGCTTGGTTATCCTTTCCCCGTTTATACAGGAACACCAACTGGCTTCATCCTGAGCACATATTGTGCCAACAACCACAGCTACAATGAGTTCAGGAGAGCATCGTCCTGTCATGTTCAGAAGACACTGTTTTGACCCTGACCTCTGGCTCTTTCACTTTTTTCGGTCCCCTCTTTTGTGATGTTCCCTGAGCCATGGGTGGGGTGGCAGGGTTTGGGAGAGGTTGATATAGATATTTTATTTATCACTGGCCAGTCCTAGTCACTTATTCTGAACACTTTGAACAGTTATGAGTCCGTGAATTGACCACTATTTACTGGAAAAAAAAACTTTGATCGAAGTTGAGAGTCTCACAAAGATATGGGTATAAACATAGATATTTAGAAAGCGATATTTTACTTTTGAAGGTATCATACATATTTAAGTATTTTACCATCCAATTAAGTCACCCATCTGCCAATTCCTGATTTTTTAATGACTTAGATGGCATCACTGTTCTCTGGGAAGCCTCACACTAGTGCTTGAAGAAAAAAATTAAACGTATGGAGCCCAGAATATTAAGGACATAATTTAAAATGCTAATTAGGAGTTTACAAAATCAATTTAGATAAAGTATAAAAAGTTAAGTCTCTGTCCATTAGCACTTTATAAAGGTACCATTAGGAATGGTCAACAGAGCGAACCCTTTCACAGTAACAGGCCAAGATCATACGTTCCCATTGTCAAGGGACTTAAATCTCAATAGACAATCCTGGAATAAACCGAATGAGATGGTTATTAATTTTTAGAAAGGATTTCACTGAGTAAAGCAAGTTGGCTTACTTTACCAAGTACTGGGACTAGAGACATGCACCTCCCCACACAGCTGTGGCTGTTTGTTTGTTTGTTTGTTTGTTTGTTTCTTAAGAGAAAAGAGGAAAAACACAAAGCACGAATCGATGCCCTTTGAGATTTGACTCTTCACTGGCTGGTACATGGGCATGTGGAGGTTCGGAGGCCAGGCTGGCTTACGATGTATCCTGAAGCAGGGCTGAATCCTAGAGAGGATACCACGTTTTAACCTGGGTGAAAAATTCTTTTTGTAACAAAATGATGGGCTGGTAAATTGAAGAAATTGGTATTGAATTTTCAGAATAAAGTTGCTGCATACCCATTTCACACAG
Seq C2 exon
GAATGGACAGACCAAAAATTACGATGGAATCCCGAAGACTATGGTGGAATTAATTCGATAAAGGTTCCATCGGAGTCGCTCTGGCTGCCTGACATAGTTCTCTTTGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031492:ENSMUST00000060943:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(6.8=100)
A:
NA
C2:
PF0293118=Neur_chan_LBD=FE(17.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types