BtaINT0038390 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014050 | CHRNB3
Description
cholinergic receptor, nicotinic, beta 3 (neuronal) [Source:HGNC Symbol;Acc:HGNC:1963]
Coordinates
chr27:37168327-37179817:+
Coord C1 exon
chr27:37168327-37168371
Coord A exon
chr27:37168372-37179707
Coord C2 exon
chr27:37179708-37179817
Length
11336 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
TTATATTCATTTCCACACAGGAA
3' ss Score
8
Exon sequences
Seq C1 exon
GATGAAAAGAATCAGCTGATGACGACAAACGTGTGGCTCAAACAG
Seq A exon
GTAACTGTCAGTCTGAGGACTGTACCTGCTGTCTAACTGTCACCGTTCTTTCCACTGAGAAAGGTTCTATGGAAAAATAATTATTTTAAAGAGTGCATTGCGTTCTTCAGGGAGACATTTGGGAGTGTTTGGGGAAGGGTTTCTTCTTTTTTTATTTTCTTCCACGCAAGTCGGAGGTCAGTCTGGAAGCCCGTAGGTGCTGTCTTCTTGCTCCTGGAGGGGGTCTCTGAGCCGGCGGGTGGGCAGGTGACCCTGACTGTGAGTCCCAGGCTCTGGTCCCTGGGCTCCTTGGAGAAAAGGGGGCCAAGTTCCAGAGTGCAACTTACCCCACTGAAGCTAAGACAACCAGATAAGAAAACCAGCGATGTTAGTTCCCCTTCCTTCCCCCGTCCTCCCTAGGATCTTGCCCCTCCCCTAATGCTGTTCTCTAGAAAGAGAAAACGGGATGACAGAGGCCCCCACTATCAACCTCAGAACGAGGTGAAGCCCAAGTCAAGACGCTGAATCCACAAAAGAACAGGAATGATGTTTAGCTCTCAGCCTGACCACAGCCTGTCTCCTGCTCTTTGTAGAGTTGCCAGGAAACAGTTACCCTTCAAATAATACCTGTCATGTAAAGGAGAAAATATTAGTACTTCTTTGACAGGAAATGAAAAGGTTGATTTAATTACTTACTTTTTTGGTTTTGTTAACAATTACTTTTTTTTTCTTTTTTTACCTTATGTCCAGATATTACCTAATCTCCCAGAGATTTAAAATCTAGATATGTTAGCTATCTCACTTAATTTTAACATATGTACATAACATTCTTCACTTACGTTGAAATGAGTTGTTTATCTGTGCCAGTTTAGTGCACACTCGTGCAGGTCTTTCTGCTAATGGTCTATAAGGAACAATGGATAAAAGACTCTCAGGAGATTTTCTGGATCTCATCTGGGGTCATCAGATTTCACCCACTCAAAGGTTTTGATCAGATTTGGGTAATTAGTATAAATTTTGCTAGTTTCAAGATATGTTAGCATATTATGAAATGGATCTGCATATTATTTTACTTGTAAATAAAAATGTTCAGGAGAAAATAATAAGCTGGGAATGTAGGTATAAAAATGCAATTTAAATAAATAGGGACTTCCCTGGCTGTCCAGTGGTTAAGATTCCAAGCTTCTGAGGCAGGGGTCATGGGTTCAATCCTTGGCCAGGGAACTAATAACCCACACACCGTCTGGGACAGCCAAATTGTTTTTTAACGTAAAAATAGTAATAATTTTTTAAAAATAAAATGAATAAATGTATTTTTCAATACATTTCTTGGGACTTATTCTACTTTTGCACTTTAGAGGCTGTGGAGTTTGAAGGTATTTTGAGTTCATAAAAGTCGGTAAGAAGTCCTGTATTTGCACTTTCACAGAAGAGAAGAAAAATTCTTTGTTGAAGTGTAAATAAGCTTAGGATGTTGGCAAAAATAAAACAGACTCACTCCTCCACACACACCTCCTCCAGCTGCCCCTTGAGGTTACAGCCTTACACATAAGAGAGTGGTCGAGGAGCCTTGGCTTTTGGGGTATAGGGACTTTTCACTTTCCTGAGATTTTGGAAACAAGAAGTCATTTCAGACAAAGAGAACAAGATTAGACATGAAGGGAAGAAACCGTCTTCCTCAGGCTTCAGCTGTACTTTGGAAATGACCTCCAGCAAAGCGAGGCCCCTGGAATCGCTGTCTGGTGAGCCCCTCCAGGTCAAGACAGAACTGACACCTAAAAATCCCAGAACGGAGCGAGAGAAATCTACAGGGGGAGGGAGAGAGTGCCTAGCTGCCATTTAGGAAAGCCTGCTGGGAACTTGGGTTCCCATGTCATAGAAGAAACAGGGGGAACATGGTTTCATTGCATTAATTTGCAATGCGTTGTCATAGCTCTTATCCATTTACATTTCTGAACCTCTCTAAATTAGCAAAGTGGGTATCATTATGCCTGTTACCAGAGACAGAAGAGTCTGCTTCATCTGGCTAGAACCAGCTTTCCCCAGCTGGAGCCTTGTTTGCACATCTAGCCCCGCGCAAAACATCCAGCCCTATTTCTAAATTAGGGGAATATTCAAAGTAGGAGAAACCACTGAGAACATGATGAAGCTATGAACCCACTCACACAGATTGGGTTTGGAGTGGGAATGTCACAATAGGGATTAGCCAACAAGGGCTGTGTTATGGTACAAACAGTGTGGGAGCAAAAAGATAGGAGAATCTCTGGCCTGGTGGCAGGCAGGGAGGGCTGCATGGAAGAGGAGGCATTGGAGCTCCACCACGACGTTACTTTTATACTTTCTTTTCTATGTTTTAGCTTTTTAAGTGTAAAAGAGTAAAGGAAAGGACTAAAGGAAACAGATGGAAAAAGAAGATAAAACTGACATTTAAAAAAACCAGCACAGTGTTTTACACAGACCTCAGTTTCAACGACAATGTTAAAGTTTATTGAGCATCTGTTAAGTGCCCAGTCTGTTACACGTGTCATGGGAACGAATACATTCAATTTTCACAGCCACCTTCCAAGGTCTATTATGATTCCCACTTTGCAGATGAGAAGACTGAGGATTGGAGGACTGGAGTGACTTGTCTCAGGCAACACACTAGTAACTGCAGTCTGGTGAAAAGAAATCATTTTCTTCTTCAGACTTGAGGAGCTGTTGGGAGACACCCGGCCGTCCTCTTGGGGCTCTCCCTGTAAAGTCTAGCTCCTAATCCTGGCCTTCTAAGGCTTTGGTTCTTTAACCTCTGGGAGCTCTCATGAAGCTGTTCTAGAAAGGCATTTAGGAGAGAATGAGGCTGGGAGTCACTTCGTTGATTCCACAGGATTTATTGAGCATCAACTAAGGGCCAGGCAATCTGCTAGATTCAGGATGTACAGAGCGTAAAACACAACCCTGCCTTCAAGGAGAGAATCTGGTGTTAGTTGTGTAAAAATAATCTCCGTAATATGATAGACACTATAAGTAACGTATATACATAAGACACTGAGTCATTACAATTATGACAATGAAATGGGGGACAAATCATGGAAGTCTTCCAAGGGGAGGAGACATTTCGGTGGGGTCTTGCAGGATCAGTAGAGGTTCCATGATCCATAAAAGTGGAGGAATTGTCACCCACCTGAATAGGTTTCCCAAACACATGACTTTCCAAAGCTCTCACACCAGAGCAAAGCTATAAGAAATTCTTTCCAATCACCTCTGTCTACCTCAGTAAAAATAAAGACAACAATGACCAAACTTCTCTCTTTTCTCTTTGCCCTCTCAGACACTGAAAAATGCTCCTTAGTCCATGGAGAGAATAAAATTCTGCCTGCTTGGTCCTAAAGCAGGTTTCCTGCAGCATACCCGAGTGAGGTGACTGGTGTTTTGTTTTGTTTTTTAACCCGATTCCTCTGCTCTATCTTCTATTTCCTTCATCTTGTCTGGTATATTTAGACATTTCTCGTCTATCCTCCCAACTGCAGACCTTTACAGGCACAAATTTAGTAACATCCTGAGAAAGTCCTCTATGGAGAGCTATTTTTGTGGTATTGATTTTATTTTGCAAACTTGTCTTCGTACTTCCAGAGAGTAATAAAAACCGTACAACCCATAAATAGATTATTAACATGGACTCACTACAACTCTGTGACAAGGTCTTCACCGCCCCAGCCACTCAGATTCCACTTAGTCTTTGTCAAGGGTAGGAAAACCGCATCGCAAGCACCTGAAGGGGATGGAAGACAAAGCCATCATCCCTTCCTTACTGACAGGACGGTCGGCCCTTTGTCTGAATGTCACCCTGTGAGTAATCACCCTGAAGACAGATGCCAAGTGTATTCACTCAACTAGTGCTTCCTGAGCAACTACCATGTGCCAGGGCCATATAGGGCACTGGGCCTCAACTCTGGGGGCAAAGTCCTTGAGCCAGAAGGTTCTGAGTGGCCAGGTGTTACTGAATGTGGGCTGCTGTCCCAGGCCACAGCAACCCCGAGGACACAGAGCTCCCTGAATCTTACAAGGACAGCATCTTGGACCAATGTGGTTTCTCCAACAGCTGGTTCCTGTGTGTTTTATTAGTTCAGTTCAGTTAGTCAGTCGTGTCCGACTCTTTGTGACCCCATGAGCTGCAGCACGCCAGGCCTCCCTGTCCATCACCAACTCCCAGAGCCCATCCAAACTCATGTCCATTTTGTCGATGATGCCATCCAACCATCTCATCCTCTGTCCTCCCCTTTTCCTATTATTTGGTTATGCCAAGTCTTACTTGTGGCACATGGGATCTAGCTCCCTGTCCAGAGATTGAACCTGAGCCCCCTGCATTGACAGCACAGAGTCTTAGCCACGGCACCACCAGGGAAGTCCCTGAATTCCTGTTTTAGATCACAGTAAGTTCAGAAATATGAAGGCCTCATTGGGTGGATCCCTGCAGCTGGTTTTGGAGGAGAAAACCAAGATGCTGGCTTTTTTTTTTTTTTTTTAAACAAACCTAAGGAAAGGCTGGCCTTGCTGTAAGGTCTGGGCCATTTGCCCAAAGCCTAGTTATCTTCCCCAACCTCCAACAGCACCTATACTTCTAGGGATTTACCTTAAACCTCCGTCACCTTCTTATCTCCTTCCTTTTCCAAAGCCTCACTCTGACCTTAGCAGACGAGGCCCTGCCGTATGGTCTTCTGATTCACGTGGACCCTGAGTAAGAATGAAGTGAGTCGGGGATCCAGAGTCTTGCTGTATAAACTTGGCAGGTCACTTCCTCTCTGACTCTCTGTCTCTTCATTTATGAAATAAGGCAATACCCAGCTGCAGTGTCGCTGGGTGGTTAAAAGGTATTATGTGTGTGCATGTGACTCCTCTGAGGTCTGGCAGGTAGTGGGAACTCAATAAATGTCATTTCCTGGTGCCCTCTTCATAGACTTCCTCATCTTTAATGACAAATCCCGTTTCTTGGCCTTGACAACTCAGATATAATGGGAATATGATGGTGGTTTAGTCGCTAAGTTGTGTCCGACTCTTTTGACCCCATGGACTGTAGTCTGCCAGGCTCCTCTGTCCATGGGATTTTCCAGGCAAGAATACTGGAGTGGGTTGCCATGCCCTCCTCCAGGGGATCTTCCCAACCCAGGGATGGAACCGGGGTCTTCTGCATTGCAGGCAGATTCTTTACCAACTGAGCTACGAGGGACGCCCCAATGGGAATATGAGACATATAATATGCCATGTTGCCGTCTTTAAGATTAAAATGAATCAACAATAATTTCATTAATTTAATTTGGGGGGTGGCATATTACATGGCTTGAGGGATCTTCGTTCCCCAAACAGGGATCGAACCCAGGCCCATGGCAATGAAAGTGTCAAGTCCTAACCACTGGCTCTGCAGGGAATTCCGACATTAATTTAGTTTTAAGAATTTCACACCTGACTTTGAGGTAATTGAAAATCCCAGGGTGTCCCAGAGGTTGCCGATCAAGGCACCAGCAGGGAATATTTGTTTCTTGCTATCTTTTGGTCTTGGGATTAATAATTATTAATGTTTATAATAATAATTTTTCTAATTATTAAGAATCATTAGAAGACTTCATTTATTATTTTTAAAAGTCATGACAATTTCTTTTTTAAGTCTTATGATTTAGGTTTAAATGAAATTTGGTTCTGGATTGTTCTGCAGCTTGACATTTATGAATGATATTTCAGGTAATATATGTAAGAAAATTTTAAGGAAATATATATGATATGGATTTGAAGTTGCACTTTTTGGAATTAAGAAAGCTAGACTGGGAGTATTTTTCTATTTTTTTTCTCAGTCTGAGATTAACTTTGGTATTTGGCCCTGACCTACCCTGTGCTCCCCTGTTCCTATAATAATAACAAGCTCTCAAGCCCGGGACTGTGGCAAAGTGGAGCTGATGTTTGTACAGAGCTTTGAGAATCTTGGCTGGGACATGCTGTGTGAACACTGGATACTGTTTCTAATCTCCTGCTTTAGAAAGGCAGAGACAGGAGGTTAATCTCCAACCCCAGGGTTTCAGAGGGAGAAGGGAAATGACCAGAAGCCTCACAGCCCCTTACAGAGCAGGACAGAGGATTTGGGCTCTGAATCCTCATCCTGATTCAGCTGACTTTAGTACGAGCAATGATGCTGTGGTGTGGGGCTCAGCCAGCATCATGGTGGACCATGTCCTGCTGGATTTTGGTGAGCCCCTCTGATGGCATGTTGGCGGGGACAGCATCTCTAATTCCCCAGGTCTGACCTCAGAAGGACACTGAAACTGTAAGGAATGTCTCTCCAGTCTTGCAAAGGAGCATAGCCAGTGAAGGATGGTCCAGGGGTGGAACTCTAATTTGATGTTCAATGCATTCTCTCTCTCTTTCTGTCTTGGGTACCCCCAACAGAGTCCCACTGACCATGAGTCCCACCTGTTCTTTACTGTTCAAGAACGTACCCTGAATCCACTGGAGCTGATTTTATATCCTCCTCAAGGATTCAGACATGCCCCTCATTCATCCAGCCACTCACATCTGCTCTTCATCCTGGAACAGAATCCTCAGTAGCCCTGCTCCTTCCTCCATGGTACCCACTGCCCGCTCCTGCCCTCTGTCTCAGCTACAGTGTCATCCAATCAGAACCGCCTTCCCTGTCCACTCAATGTCCCCCATTTTTTCACCCAAACCACCCCCTTCGTGGCCGTGAGCACAGGGTGATGGTTTGCCTGTATCATGAATCTTCCCTGGTGGCTCAGTTAGGTAAAGAGTCTCCCTGCAGTGTGGGAGACCTGGGTTTGATCCCTGGGTTCGGAAGATCCCCTGGAGAAGGGAATAGCAACCCACTCCAGCAATCTTGCCTGGAAAATCCCATGGACGGAGGAGCCTTGCGGGGCTCTAGTCCATGGGGTCGCAAAGAGTCAACACAACTGAACAGCTGACACACACACTCCCCACCAGGAGTTCCCACAGAAAGGAGTGTGAGTCTGTCTGGGGGGCAGAAAGAGGACTGAATGGTCTATCACGGGCTCTGGTCTGAGGCAGCCCCAGGTAGAGGACAAGGTGGCCCTGCTCAGAGCTGGTATAAGCCTTGCATATTTGTGGGATGGATTAATTTCCCCCGAATATTAAGTTCCTGAAGCACAGCCTCTGGACTTCCTCGGGCCACAACTCTCCATCCTGCTGCTGGAGGTGCGATGAGCAAGACGAATCTTTCCAACGGAACCACCTCTCCCCCGGGGCTTGGCCCGTTTCCCTGAGCACAGTCTGCACAGCTGCTGTGCGTTTGCCCCTGGAATCTGAGCTCCCCACTTCTTCCTGGGCTGCAGAGCCAGGCTTCGATAAAGGTGACCAGTTCCTGTAGAAGAGAGAAGGCTGAATTCCAGAAGCAGGCGATTTTTTTGGAGATCTTTAGGTTCCAAGTGGAGACACTGTGGGTTTGGGCTCACTAACACTGTGCTCACTTAACACTGATATTAAAGAAGGAGCCAGAGTGTAAGAGACCAGTTCTAGTCAGTCTGCCTAAACGTGTCTGTCTGCAAGGCTCGTCCCTGTGTACCTGCTGCTTGCTCCCTTTGCTGTTGCTGGTCAGTCACGAAGTCGTGTCCGATGCCTTGCGACCCCATAGACTGCAGCACACCAGGCTTCCCTGTCCTTCACCATCTCCCCGGGTTTGCTCAAACTCATGTCCATTGAGTTGGTGATACCATCCAACCATCTCATCCTCTGTCACCCCCTTCTCCTTTTGCCTTCAATCTTTCCCAGCCTCAGGGTCGTTTCCAGTGAGTCGGCTCTTGACATCAGATGCCCAAAGTATTGAAACTTCAGCTTCATCTTCAGTCGTTCCAATGAATATTCAGCGTTGATTTCCTTTAGGTTTGACTGGTTTGATCTCCTTGCTGTCCAAGGGACTTCAGGAGTCTTCTCTAGCACCACAATTCGAAAGCATCAATTTTTTGGCGCTCAACCTTCTTTACTGTCCAACTCTCACATCCATACTTGATTACTGGAAAAACCATAGCTTTGACTGTATGGACCTTTGTCAGCAAAGTGATGTCTCTGCTTTTTAATATGCTGTCTAGGTTTGATGAAAATGAAAGAGGAGAGTGAAAAAGTTTGCTTAAAGCTCAACATTCAGAAAACTAAGATCATGGCATCTGGTCCCATCACTTCATGGGAAATAGATGGGGAAACAGTGGAAACAGTGTCAGACTTTATTTTTTGGGGCTCCAAAATCACTGCAGATGGTGATTGCAGCCATGAAATTAAAAGAGGCTTACTCCTTGGAAGGAAAGTTATGACCAACCTAGATAGCATATTCAAAAGCAGAGACATTACTTTACCAACAAAGGTCTATCTAGTCAAGGCTATGGTTTTTCCAGTAGTCATGTATGGATGTGAGAGTTGGACCGTGAGGAAAGCTGAGCATTGAAGAATTGATGCTTTTGAACTGTGGTGTTGGAGAAGACTCTTGAGAGTCCCTTGGTCTGCAAGGAGATCCAACCAGTCCATTCTGAAGGAGATCAGCCCTGGGATTTCTTTGGAAGGAATGATGCTAAAGCTGAAACTCCAGTACTTTGGCCACCTCACGCGAAGAGTTGACTCATTGGAAAAGACCCTGATGCTGGGAGGGATTGGGGTCAGGAGGAGAAGGGGACGACAGAGGATGAGATGGCTGGATGGCATCACTGACTCGATGGACGTGAGTCTGAGTGAACTCCGGGAGTTGGTGATGGACAGGGAGGCCGGGCGTGCTGCGATTCATGGGGTCGCAAACAGTCGGACCCGACTGAGCGACTGAACTGAACTGAACTAGGTTTGTCATAGCTTTCTTTCCAAGGAGCAAGTGTCTTTTAATTTCGTGGGGGCAATCACCATCCACAGTGATTTTGGAGCCCAAGAAAATAAAATCTGTCACTGTTTCCACTGTTGTTCCCTGCTCGAGGTCTATTTTATATGTTAAAATACACTTTTCATATATATAAGGAACTAAAACCTCAGTCATTAGAAAACAAACAACCTGATTAAAGAATATGCAGAGGACTTAACAGCCACTTCACCAAAGAAAATGTATGGATGACAAATAAGCATATGAAGAAAAGCTCAATGTCATTTAGTCATTAGGAAAATGTATAGCAAAAGCCATAATGAGATACTACTTTACAACTATTATAAACATTTCAGTGTGACTGTACCCAGAACAGGAGATGATGCCAGACAGCTGGAATGCTCATGCATTGCTAGTGGGAACAGAAAATGATCCAGCCACTCTGGTGCCATATAAAGTTAAACATAGACTTACCCTATGACCCTGCCATCCTCTCCTAGGTATTTACCCAAGAGAAAAGAAAATGTTTTTCACCCCCAAACCTACAAAATTTTTATAGTCACTTTATTTATAGTCATTAAGAATTGGAATGAATACAAACATTTTACCTGGTAAATGGATTAAAAAAATTGTGTTATATCCCTACAATGGAATACTTCTCACTAATAAAAAATAAACAACCTACCTAGAATCCAAAAATGTATTTCAATAGGTAAAAGAAGTCTGGATGGACAGGCCATGGACTGTGATTCCATTCTCTGGCATTCTGGGAAAGGCAACATCACAGGATCAGAAAACAGAGCGGTGGTTGCCTGGGATGGGGAGGTGCGAGTGTTGATTGCAAAGCGCAGCCTAAGGAAAACTGGGAGCAGGGGAGCTGTCCTGGTATCTTGATGGTGATCATGACTATCCAACTGTTTGACTATAGAACCGGACACAAAAGAGTGAATTTTATTGTATGTAAATATTTTAAACGTAAAAGTGAAAAACCAAAAATGCTGCTCTGGGTTCCCTTCAACATTTCTGAGATTCAGACTTGCTGCTGATAGTGGAAGTCTGCTTGTGTTAGTCACTCAGTCGTGTTCAACTCTTTGAGACCCCATGGACTGCAGCCCACCAGGCTCCTCCATCTATGGAATTCTCCAGGCAAGAATACTGGATTGGGTTGCCAAGTCTCCTTAGCAGGAGACAAATTATTCATAGAAAGGAAATTGTATTTGCTTTTCAAAGTGGGCAGAGGAAGAGGAAGGAAGAGAGAAGCCTGTGAGTACCGAGTAAGCATGGTAAATGCTTTATTAGTTTGAGCTCTTAAACTGCCAGCCTTCATATGCATGGTTTTCCATAAGGAGTCATGCAGTTTTTTTTTTTAATCCTTTAAGTGTAGCTTTCTAACGTCCCTACCTTTTAAAATTTGGTTTTCAAGGGTCAAGCCTCACAAATATTGTCTAAGAGAGACAGTGTCTCATCTTGAGTGTATCATTCCATCCTTTTCCAGGCATCATGCATATTTCAATATTGTACCATCTAGTGAATTATCCATCTGCTGACTCCTGATTTTTTAATGACAAAGTTGGCATCACTAGGCTGCAGGGAGCCTCATACTGGGCACACCCTCCTGACTTTCTGAAATGTCATTTAATATTATCCTTCATTATTCCTCAACTGTCCACATGACAGATGGTGGGATAATTCACTTTCAGGTCAGATTTCATAACATTCTGGATTCCAAATCTTTTTAAGTCCGCTTCTACTGCAATTGGGTCATCCATACATCATCCTTTCGACCTTCATAATCCAATCAATTAATGGTTTTGTTAATCTGGATCCATCAGCCCCTGTAAACCATGCTAAATGATTTCATTCTATTACGAGGAAAAATATGCAAGCTAACAACATTTAGCAATATAATTTAAAACTAGATTTGGTGCTTCACAGAATAAGAACAGGTTAGAATGTAAAAGGAAATTCTTGGAAAATATTTTTCCATTGCATAAAACTTATAATGTCCTCAAGAGTAGTCAGCAGATACTGGATATTTCATATTAGCATACTGTGTGGATCTTTGTCCAAGACTCTTGATTGATATTCAGAATCATTGATATCCATTTTCATGAGATAACTATATCGCTGGATGGACCAACTCTCCAAGAATAAACTGAGTTAGAGCTGTCTTTGCTTTTCTTTTGTTTCTTCAGAGAAAATAGACTGAAAACAAATAGGTCACAAATCAGTGAAGTTTGTTGCTGAGCCTCTATCATTTGTGAGGTGGTCATGGCAATTTTGGAATTCCCAGGCTGGACAGGTGTGAGAGTCTAGACCATCAAACACCAGGCTGGCTCAGGCTATACCTTCAACTGCCCTGAGTCACAGACCAGGGCCATAGGCCTAAAGCAGATGTATTTCTCTTTTAAAATAAAACAAGAGATTCATAAATTAACAGAAACTTGGAGATTCCAAACTCGAACTGAATTTCCAGAATAAAATTATTCTGAAATAATTGTATTAATTTATATTCATTTCCACACAG
Seq C2 exon
GAATGGACAGACCACAAGTTACGCTGGAATCCGGATGAATACGGTGGGATTCATTCCATTAAAGTTCCGTCAGAATCTCTCTGGCTTCCTGACATAGTTCTCTTTGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014050:ENSBTAT00000039752:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(6.8=100)
A:
NA
C2:
PF0293118=Neur_chan_LBD=FE(17.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]