Special

DreINT0046788 @ danRer10

Intron Retention

Gene
Description
cholinergic receptor, nicotinic, beta 3b (neuronal) [Source:ZFIN;Acc:ZDB-GENE-030102-4]
Coordinates
chr14:41155443-41158229:+
Coord C1 exon
chr14:41155443-41155487
Coord A exon
chr14:41155488-41158119
Coord C2 exon
chr14:41158120-41158229
Length
2632 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGT
5' ss Score
9.81
3' ss Seq
ATTATAATCTGGGTTTGCAGGAA
3' ss Score
6.74
Exon sequences
Seq C1 exon
GATGAGAAAAACCAGCTCATGACCACTAATGTATGGCTGTATGAG
Seq A exon
GTATGTAACCTGAAACATCACTGACAGTGTTTGAATATGCTGTATGCGGTAACATCCAAATTAATTAGTTGTATTGAAGTCAAAAATATTATTTCATGACTGAATCTGCAAAGACTGTGTAGACATTGTGCAATTGTAATGGTCATATGAGCTAGACATAGATCTTTAAGGTATATTTTTTAAGGCATTTGATATTCTGACCAATCTGCGTTACTTTAAAAGGCTGTTAAACCCCCTGTTTCAGCAGGGTGTTTTCACACCTCTAGTTTGAAAAAATTCAGGAAAATGGGTAAATCCAGCTTTATTTAGGTGGGAGTGTCAAGTGGCGAAAAAAGGGAGGGTTTGCATTAAAAGGGGAGTTTCAGTACATGCACTACAGCTGATTTTGACACCAGCAACTCAAACACAGATGCAGGGGAGCTAGACAGTGACTACGTTTACATGGACATCACTACTCAAATTATTAGCCTAAATCTGAATAAGACAATACCATGATGAAGGTGTTTAAATGTGTTGCTTTTTAAATGTTCCTTTCATGATCCTGTTTTACAAGTTATAGCACATAATTCGATTAACGCTATTGCATCACTGCGCTATCCACATTTCCTCTGGAGTTCCATGTAATTTCGTCTGTTTCCTCCTTAATTTGTTGACTTTATCTGCAGTTTGGCACTTTCACTTTCATTCAGGAACATTTAACGCTCGCCCCTTTCACAAACGAGATATTGGACGCAGGAATGAACTACTGGAAGAGGGTTGTTTTAATGGGATTTGATACTGCACACCATATGGGAAAAAACTTCTTTATTTCTTGGTAGATGCAGAGACTTAGTAGGTGCAGAGAATAGCGTCAAACAGCCGTGTGTCTATAGACTATGTTGTCACAAAATGCGAAGAAAATAATATGAGGCGGAAATCCTACATGACAAAAATAGTAACATACCGCTGTTAGAACTTAAATAATAAAATTTAATTTGTTATGAATTTGGCATGTTAAAGGCCCATGAAACTCCCCTGTCTCAGCAGGGTTTTCACACCTCTAGTTTAAAAAAGTCAGGAAAGTAGCTGAGTCCAGCTCTGTTTAGTTGAAAGTGTCGAGTGGTAAAAGAGGAAGGGGTTTGCATGAAAAGGGGAGTTTCAGTTCGAGGATGCAATGAATTCCACAGAGGCAAAACAACACACAGACGCAGAGGAGAAATACAGTGACAGTTTACATGGACATCAATAATCAAATTATTTGCCAAATTCTTAATTTGTCGACTTTAACTGCAGTTTGGCCCTTTCACTTTTATTCAGGAACATTTCATGAATGCCCCCCATGGCAAACAAGATATTGGATGTGAGGAACTGCTGGAAGAGTGTTGTTTTAATGAAATGTTTGTGACCGCATGACAAAAGGGAGAAAAAAAAACCTTCACATTTCTCTGTAACTTAGGTGCAATTGGTAGGTAGAGTCAGAAAGTCGTGTGTGTATAGAATATCACTTCACAAAATGCGGCGAAAATCCTACTCAATGGTAACAGTTTGATTAAGGTGTTTACACCTTAGGTAAGGTCTAGGGTATGTCTTTAAAAACTGAAAAAGTACTGCTGATGATAATAACTTTGCCTCTGAATAAACATAAACAAAAACTAATGATCACACACTTACCAAATCCGTAGAGACATGAAAAAATACACCAACTGAAACCATGTCTTTTTTTAAAAGAAGACGAGCGGCAAATGTGGATTTCACCATTTCCAGATGAGAAAAGCACTCTGCTAAAAAATGTCCCTTACAAACGTATTTTTACAAACGTTGCATGTTAGCAGACTACTGTAATCCATACATGTGGTCCACACGCAAGCCAGGCTGTCATCAGGGGGAAATGGAAACATAACCTTCGTTGCAGCACATTTATAAACGCAACATAATGACCCAGGTCTCAGAACAATTCTTCTACTACTTGTTTAAATTAAGGTTGGCAAAACATTGTGGCATCTCTCTGAACACTGTAACAGGTAAAAACATTCTTTGAAGCTATATCATGCATATTAATAAAGTTGCATCTCATTCACAATAGAGTGCGCTGATTGGTTTGAACCAAGTCTTTCTCATGAATCTCATTAATAAACAGATGTGCTGAAAATGCAATGACGTCACTTTGTACCGACTGGTACAGACATCCAATCTCCAAGCTGGATTTTACACAATGATCTCATCATCATGATGTAGCTTCAACATTTATTTTCAAACAAGAAGAACGAACTTGCTCTGAACAACGCAAAAACAACCAGATTTCACTTGTTAGCTAAATATATGTGTCCTAATAGTGTTTTTACCAACGTGAAACATATATATGACTGTCAGCATCTCAAAAACGTGTTTCAGGATCCTTTAAAAAAAACTTACAAATATAATTATGCTTAAATAATCATCAACATCAAACATCATCGAATAATCAATCTTATCTGGTTTATTGCAATTTCTGAGTATTTCACCTTGGTAACAACAACAACTGAAAATCAGTAAAAGCATAATTTGAGGAATAGGTAATGATCTGTTTTCTGTAAATGCTACCTGACAGTAGTAGTAGTGAAGTAATGGCAGATTTTTGTCATGATAAACTCATTATTATAATCTGGGTTTGCAG
Seq C2 exon
GAATGGCTGGATTATAAACTGCGCTGGAACCCTGAGAATTATGGTGGGATCACATTTATCAGAGTCCCGTCAGAGAGCATCTGGCTCCCAGACATCGTTTTATATGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000038508:ENSDART00000050037:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF0293118=Neur_chan_LBD=FE(6.8=100)
A:
NA
C2:
PF0293118=Neur_chan_LBD=FE(17.6=100)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]