MmuINT1007233 @ mm10
Intron Retention
Gene
ENSMUSG00000033392 | Clasp2
Description
CLIP associating protein 2 [Source:MGI Symbol;Acc:MGI:1923749]
Coordinates
chr9:113892397-113896785:+
Coord C1 exon
chr9:113892397-113892475
Coord A exon
chr9:113892476-113896641
Coord C2 exon
chr9:113896642-113896785
Length
4166 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
TATTGTGCCTTCTTCAACAGGTA
3' ss Score
10.56
Exon sequences
Seq C1 exon
AGAGTCTTTTCCAAATGATCTTCAGTTTAATATCCTAATGAGATTTACAGTTGACCAGACCCAAACGCCAAGCTTGAAG
Seq A exon
GTAAATCTTTGATTTCTTCTGAAAATATTGCAACGAACTGAAGTATTTTATTATAAAGTTAGGATAATATTTACATTTTTGTCACAGAAGAAACTGCTCGATCAGTGGGTTTTGTTTTTATAAACTTTCAGATAGTTGCGCCAGCACTGCGGGACCAGCTTCACTCTTTTTGGAGCTCAAAGGTTTTCTTTGGTTCTTATTTTAGCCTGCATTATTTCTTCTCATAACTCTCTGCAGCGTTTCCCATAACGTTGTATGCATTGATGTCAGTACTAACCTTCCTAAGTCTTGTACACATGCACATACTTGATTTCAAATGTTCCCCAGAGGCTTCACCCAGCCTTCGGAAAAGCTTTCTGGGTAACCACATTTTAAAAGCATCAAAAAATATGGCCATCTAACCCTATGCTGGCAAAACAGTTACTTTTTAAAATCTTCTTTAATCTTATGTTTGTGATTTCCAAGTCTTTTTTTCTCTTAGTTATAGTTTTTGGAGACTGATAAATTATTTGGGCCACACATAGCATTGCCTAGATGCTTAGTGACATACATACAGACATACATACATACATGTATACACACACACACACACACACACACACACACACACACACACACGTATGTATGTATGTCCTGGGATATGGTTTAATTGATGGAGTGCTTGCCTAGCATGCACACAGCCCTACCAAAATGTTTTTCATGAGCTGGTCCATTGAGATTAGAGTCAGGAGATGGGGAGCTCACTGCTGGTACAGGCCTTGGGGTTTCTGCTTTGTTCTGCACAGATGTGCTCTACAAGCCTCACACCCCAGGATCAATTTTCCCTTTACATCTTGGGATGCAGTTATGCCTCTGAATCACAATTATGTTTCTAATAAGGGTGACAAGCACCCAACGCAGTGGCATTTTCTCAGAGCCACTATATAAAAGGGACCTTCTGGGTGTTTTGTTGTTGTTGTTTTGAAAAGTGACATGCAGAATAAGGTTTTATTTAATACTAATGCATATTGTAGCTCATACTATATCCAAGGCATTTCTGGAAATAGAAAACATAGACTCTTTTATCATTATTACCTATAATACTTGATTAACTAAATGGTAATAAAGGATTTCATATAGTTATCTGGTTATTCAGTAGCTGCTGAAAATATAAGGGAAGGAGTTTTGTAAATGAAGCCTGAAGCAATCTTTAGAAACAGATGTCAGGTGGAGTGGTGTAGGCTTGCGATCCTGCCACAGGAGGCACTGAGGCAGGTAGATCATCAGTTATTTATCAGTATGGGCTACACAGAGTTCCAGGATACCTGAGCTGTGAAGCATGACTCAAGAGACAGACGATAGGAGGGGCAGACTAAACTTGAAAAACTAAAGAAAAAGACAAGGAAAGAGAAAAATAGGGATGTGGGAAGCTGGTGAGGGGAAAAGGAGCTTCCTGTGGGCCTGGAATCAGATGCTTTGTAAAGTGCTGTGAAGTGCGTGTAAGTCCAGTGAGCAGCAAAGCTATGGGAGCCATCTTTGTTACACGTTTAGACAACAGGAATAAGTTACACTGCTGTCATACTTCATGCCCAGGTGAGAACCTCATGAAGGTGGCTGACAGGATTAATTATAAAGAACTTGGTCAAGGTGGAAGTGCTGAAGAGCTGGCTCAGCACTTAACATTCAGGGGACTGGAGTTGGTCTTCCAGTAGCCAAGTCAGGAAGTTCCCAAAAGCCTGAACTTCAGCTTAAGGGATCCACTGTCCTCGTCCACACCTGCACATACGAGGCATACATTCACACAGACCCACATGCATACATGCAGATAAAAACTTGTTTAAGCCATAAGAAGGTAAAGAGATGGAAGGATGGCTTAGTAGTTCAGAGCAATCGTCTCACAACCATAGCAACCAGAGCTTGGATCTGAGCAGCCAGTAACAAGCTGAGCAACTGCTTAATTAAAAAGCTCCAAGGAATCCAGTACCCTTCCTCTTTTGGCCTGCACACACACACACACACACACACGCACACACACACACACACACACACACACACACACACACACACGCGCGCACGCGCACACGCACACACACACACACGCACACACACACACACACACACGCACACACACACACACACACACGCACACACACACACGCACACACACACACGCACACACGAGCACATATATTCACATAGAAGCACATATACAAAATGCTGTCAAGTTTTTACCAGGTTACTGAGTGTGGTGCGCATACACCTTTAATTCCAGCACTCAGGAGGCAGAGGCCAGGAACCAGCTTGCTCTATGTAACAAGTTTCAAAAGAGCAAGGACTACATACAGAAACCCTGTCTCCAGCTAATAATAATGGTGGTAAATATAAAATTAGAAATAAGTTAAAGAAGTAAATCTTTTTTAAAGAAAGAAAATAGCAGTAGACTAAATAACAATGCAGGGTGATTTAAATTTTAATTAAATTAACGTGTATTTGTTAAATGCATGTGATTTTTTTCTGAATACTTTTTCCAGATCGACAAATATGCTGAAATAGTACATAAACCTTTGCAACTACATTATTTTGTTCTTTGAAATGGAATGTATAGTTGCACAATTAGTTACAGATTGCATGACTTTGTGAGATGTCCTACTAAAATGGGAATGTTGCAATGGTTATGTTTCTGTGGTTGCTTCCTTATTATAGTTAACACCACTTTTTTGTGGAAACTTTCTAAAACTGCAGTACTTGCATTGCATGATTATAAATGTCTTTAATCTCAGCACTTCAGAAGCAGAGGTAAATGGATCTCTGTGAGTTCAATGCCAGCGTGGCCTACACAGAGTTCCAAACACCAGGGCTACATATAGTGAGACTCTGACCTCCATAATCTCATACACAAACCTACCCATACATGTAAACACACATTCATATACATAGCACACAGTTAAAGAAAAAAAAATTTAAAGATCATTTAAAGTCCTGTGGATGTTCCAGTGCCCGAGTGCTTGCCTGACATTAGCAAGGCAATAGTAGATTTAATGTGCAGCAAGGCAAATAGTGATAGTAATAACAACTTTTAAAACTAACGGACCTCAGAGACAGAAGAGGACCTAGGCTCAGTTCCCAGCATGTACATGGCAGCACACAGCCTCCACAACTACAATCCCAAGGGATCTGACTGTCTTCTGGTGTCCATGAGCACCAGGTATTCATATGGTGCATACATGGAGGGAAATGCTCATACACATAAGAGTAATCCATAAAGATAATTGCAGCACTCGGGAGGCAGAGGCAGGCATGTGTCTGAGTTCTAGGCCAGCCTAGTGTGCAAAATAAGTTCCAGGGCAGCCGGGACTACACAAAGAAACCCTGTCTTAGATAAACAAAACAAAACAAAAGTTAAATAAACAACCCCGGTTGTTTAGAAACTGTAGAATGTTGGACTATGTGACCAGAAACAATGATTCTCAGCCTGTTTATTTCCACTAGCATACCGGAGAGAAGAGATAGAATTTAATAATTGCTCACTGGAAGAATTAAAAATGGCTGAGCCTAGAAGGAAGCATACATGCCTCAGAAACAGGTCCATTTCCAGCTCTTCAGCTGCCTTTCATGCACTTTACGTAAGAGAGTGAATTGGGAGAGCTGGGAATGTATCTCAAGTGGGAGAGTGCTTGGCTAGACTGCACCAGGTCCTCGGTTCTGTACCCAGCACCTTATACTGTACTCAGTACGCAGGAGGTAGAGTCAACAGGATTAGAGAAGCTCAAGGGAGTTCATTCTCAGCTGCACAGCGCATTTGAGGTCAACCTGGCCTAGAGGCCGCACCTTAAATCTAGAGGACAGTTATGTTACCCACTGTAATTACAGGCTCGTCGTGCCATATTTCACCCAAAAGAAATGACCATGGCGGACTAGCCATGCACACACTGTGACAGGAAGCTCAAGGAGACATTTTCTAGTTTGTTGAGGAAATCTTTAGCGCTTGCTCATACTCTGGAAATGGAGTAAGTTCCAATACTCATGGAAACAGGGTCCTCACCTCATGTCAGGGCAGGCAGCCGTATCATTCCTTGGAGATTTTTTGTAACTGCTGATGCCGCACTTGTCAGAATTATTTGTGATATGTTACCTAGTGTCCCAAGTGTCCTTCTCACTCTCCTCTTTTATTGTGCCTTCTTCAACAG
Seq C2 exon
GTAAAGGTGGCTATCCTTAAGTACATAGAAACTCTGGCAAAGCAGATGGACCCAAGAGATTTTACAAATTCCAGTGAAACTCGCCTGGCAGTGTCTCGGGTCATCACTTGGACGACAGAGCCCAAAAGCTCTGATGTTCGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033392:ENSMUST00000111838:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.005 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF123483=CLASP_N=FE(11.5=100)
A:
NA
C2:
PF123483=CLASP_N=FE(20.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types