MmuINT1007262 @ mm10
Intron Retention
Gene
ENSMUSG00000030155 | Clec2e
Description
C-type lectin domain family 2, member e [Source:MGI Symbol;Acc:MGI:3028921]
Coordinates
chr6:129098363-129100913:-
Coord C1 exon
chr6:129100786-129100913
Coord A exon
chr6:129098489-129100785
Coord C2 exon
chr6:129098363-129098488
Length
2297 bp
Sequences
Splice sites
5' ss Seq
TGGGTATGT
5' ss Score
7.43
3' ss Seq
TCTCAGATTTATATTTTCAGGTA
3' ss Score
7.81
Exon sequences
Seq C1 exon
TCAAATCTTCTGAGTCTCAGGAAGTCCTCTCAGCTCACAGATGAGTGCTGCAAAGGTTGAAGAGGCTTCCATGGGCATGCTGAAGACAGACCTCACTGCCCCAGACTGCCTGCAGGAGGGAGAAATGG
Seq A exon
GTATGTATTTTAATGCACTTTGAATCACACTAAAGGGATAGAGGGGGTTTCAACAGAGACCCTCAGAGGAGCTAAGTATCCTGCCTGTTAGCCTGTCATGGTAAGACTCTATAGAAGTAGAAATGCTTGGAGGTATCTGTTATATTAGTTACTCTACCGGATTATTTAATACTCAAGTATTTTCTTTCTACACTCTTCTATTACATTAATTTTTGTTTTTCTTGTTTGTTTTACTGAAAAAAAAATATTGGGTTTCCTGGAAAACAGTGTTCATACTCACCAAAAAAGCAAGATCAAAAAGAGTGTAGATGCTTTTCAACTGAAACAAATTTTCCCATAATTAGAACATTTTTATTTCCTGCATGGATATATATACACACTCCATAGTTCTGTGATAGAAGTTATCCTGAGTTGAGAATATATCATTTTTTGTATATGCTTCAAATTTTCCATAATAAACACTTGAGGTTTAAATAAGAGAAGGAGAAACAAGAGGAGGAGGAGTTAGTGTATAAAATGAAAACTATTCTGTACATTGATATATTTTTTCTGCAACATTATAAACTCATTCATGACTTTTAGAGCCCCTGTAATAGACTCTTTAGAACTGTATATGTAGAAATAGCCATGTAGTTTGACTATCAAAACTTTTATCTCTTTTTATGACGCTTGACTGTGATTTCTTTTTCTTGCCCTTCTGTCCTGGACAGGACTCCCAGAGTCACAACTAGAATGGTGTGAGCAGACATCCTTACCTTGTTCTGCGTCACTGGGGAAAAGCATTTATGCTGACTGTAGTTGCATTTTTGTTTTGGTGTATAATAGGTACCTGTCTTAGTTAGGGATCCTATTGTGGATCCATGACCAAAGTAATTTGGGAATTAGAGTGTTTATTGGGCTTACATAGCACTGTTCGTCACTGGAGGAATTCAAGCCAGGAATCCACACAGGGCAGGAACCTGGAGTCAGCAGCTGACACAGAGGCTGTTGAGGGGTACTGCTTACTAACTTGCTCCTAGCAGTTTGCTCCTAATTCTTCTTATAGAAGACAGGACAACCATCCCAGGAATGACATCACCCACAATGCACTGGGTTCTTCCACCACAATCACAAATTAAGAAAATATAGTACTGTCTTTCCTACAACCCGATCTTATGAAGGTGTTCTATTAATTCAGGTTCCCTACTCTCAAATGACTTTAGCTTGTGTCAAGTTCACATAAACCTATCCAGTACAAACCTTTTATCAAGTTAGGGAAGTTCCTTGAGTTCTTAATGTGCTCAGAGTTGTTATTTTGTATTTACCTTGAATTTTGAATATACTTTTGCTGATATTAATGAAATGGTTGTTGTTTTAATTTTCTTCTTCTGATAATATATTGAATTACATATCATTACGTAGTTCTTTAGAGTGAGCAAGTGAATTATCTAGTTAGTTACATTCACAGATAGAACAGGGTCTGATATAGTTCTCTCAACCTCTTACTCAATTTTTTTATTTTTATTTTATTTTTTTAATTTTTATTTTTTATTTTTTGGTTTGGTTTTTTTTTGTTTTTTGTTTTTTTTTTTTTTGAAACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGTCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGTGCCACCACCGCAGGCTTTTTTTTAAAAAGATTTATTTATTTTATGTATGTCCATTACAGATGGTTGTAAGCCACCATGTGGGTGCTGGGAATTGAACTCACGACCTCTAGAAGAGCAGTCAGTGCTCTTAAATGCTGAGCCATCTCTCCAGCCCCCTTACTCAATATTTAACCAAGATTGGCCTTGAACTCCTGACTTTCTTGTATTAGTAGCCACATTCCTGAGCCATCACTCCTGACACATTGATTTTTTTTTTCTCTTTACTGTTATTATGGTTTCCTCAGCCCTAACCAGATCTATTCACATGGAACTGTACCTATAGATAACTTTGTTGGTGTTTCTTCTTCATCCTGATCTTCACTCTTTCTGTTTCTTGCTCTCTCATTGGCCCTTACTTCTATAACTTGATGATTCTATGACACAAAGTCTGTTTCCCTTTCCTCTAGTGTTCTGTCAGCCAAAGATATCATTTATGGACTGAAAACTTCTGTGAAGGGGTTTTCACTAGGGGAGTACAAGACAAATATGCACATGATTCTGGGATAAATTTATATTTTTCTATAAAAGGTTTGCAAAATTGACATTCTCAGATTTATATTTTCAG
Seq C2 exon
GTAAAAAACTCCAAGCAAAATGTCTCGGAATCATCTCCGCTGCATCTTGTGTTAAACTTTACTGCTGCTATGGAGTGATCATGGTCCTTACTGTAGCTGTAGTTGCTCTTTCTGTTACTTTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030155:ENSMUST00000032258:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types