MmuINT1008046 @ mm10
Intron Retention
Gene
ENSMUSG00000066704 | Cyp2b19
Description
cytochrome P450, family 2, subfamily b, polypeptide 19 [Source:MGI Symbol;Acc:MGI:107303]
Coordinates
chr7:26757142-26759198:+
Coord C1 exon
chr7:26757142-26757360
Coord A exon
chr7:26757361-26759035
Coord C2 exon
chr7:26759036-26759198
Length
1675 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GTGCCCTTATGGTTTGGCAGCTT
3' ss Score
5.91
Exon sequences
Seq C1 exon
CCTGCTGGAGTGTGCACTGAAGTCAGAAGTGATTAGACCAGGACCATGGAATTCAGTGTGCTGCTCCTTCTCGCTCTCACCACAGGCTTCTTGATATTCTTAGTCAGCCAAAGTCAGCCAAAGACCCATGGCCACTTCCCACCAGGACCTCGTCCCCTGCCCTTCTTGGGTAACCTCTTGCAGATGGACAGACGGGGCCTTCTGAGCTCTTTCATACAG
Seq A exon
GTGAGCCATCCACAGGGCCTGAGACCTGTGGGCTTAGCCCAGGTTTGCTCTTGGAGGTCTCTCAGCAGGAAGAGCAAGGGGCTCCTTCCAGGCTGTATATTCAGGTGGGAATGTCACTGAGTGAACAGTGACATGCTGTCTCATAATGATGGTACTCAGATGGACAGGCAAGTCTTCCAGTGTTGGAACTGTTGTGGACACTGTGCTTAGAACACGAGAGGTGTGAAGGTGTTGAGGTGTAAGTGTGTAGCTTCACTCCTTGGAGCTTGTCTTTTCTAGAAGAGAAAGAAAAATGTCAGAGGTATCAACCATAGGTTTTGCTCCTGCCAACAAAAGAGATTAGCCTGAGGTGTTCCAGGACAAAGAGGAGGAGAAGGGCGGGAGGTGAGGTGAGTAGGTAGATAGGTAGGTAGGGCTAATCAGCTATAAACACCATGCACTATACAAGCCAAGGACACTGGCACTGTCTATACCAGTCTCTGTACTGTTGCTTCACAAGTGGTATTTTGTGTTAAATTATCACTTGTTCATAATAATCAATGTGCAATAATCAATGACTATCCATGACCTGGTGGCCCATTAAGAGAGCAGATATAGTGGTAGCAATCCCAACTTCTTGCCCTCCTTTGGTTTTTAACAGATCAGCCACCTGGATTCACTGGCATAATCATTCATTTATATTTAGCTTTTGAGACAAGGTTGTCCCACTTTTCCCAGGGTAATCACAAACTCATGATCCTCCTCCAAGTTTTATATAATATCTTGTATCTGATCTGTAGATTGTTCTTTCACTGTTCCATAAGGTATGGTGCTGCAACCCCACCTAAAATTGTAAATACATCAACATCAAACATATAGAGCTTTTTCATAGAATTATTCCCAAAACAACATGTGTGCTGACCATTTCCACAGCATCTAATTTCTATTAGCAGCATGGAAATCTAGAATGAGCTAAAGGTCACAAGAGGATGAGGGTGGGTTATTTGCAAATGTGCACCATTCTATTCAAGGGCTTTCAGCACTGGAAGGTTTGGATATTCCTGGTACCAATTCCCTAGAGATGCCCAGAGACAACTGCACTGCCAGATAGTTTCCTGATTTGTACTGTAGACATGCTTGAAGTTAGGACCACCAGCAGGGGTCATCCATTTTCCCTCCCAAGTAACCCACTGAATGGGTCAGGGCCATTCTCTCTGACTGTTTTCAGAAGGCATGGTATCTAGATAAGATGTCAGGAACTGCTGGCCAGACTGAAGGGTGTGGTCATAGGTCTATATCTACATCTGTATCTATATTCATATCTATATATAGATCCATATCTATTTATTTTGTTTTGAGGTAGGGCCTTAGGTAGCCCAGGAAGGCTTCCAAGTGGATACATACCCAAACATAACTACTCATTATATGGCCTCTACCTCCTCAAGGTTGAGTTTATAGTCATGTGTTTAGAGCCCTACTCAAACTCTACAGTTCTGGTGCATTGATTAGAACATACAACCAATAGTGCAGACCTGCTGGGTAGTGAAATAACCCTTCAACTCTTAGGTCCTCAGAAGGGGAAGGATGGCCAGGAGAGGAGATGCCTATTTATCAATCTGTATCTAAGCATTTTAACGGTTTAACAACAATGTCTGTGCTGACTAGCCACAATCCTGGTGCCCTTATGGTTTGGCAG
Seq C2 exon
CTTCAAGAAAAATATGGAGATGTGTTCACAGTACACCTGGGACCGAGGCCCGTGGTCATGTTGTGCGGGACAGACACCATAAGGGAAGCTCTGGTGAACCAAGCTGAGGCTTTCTCTGGCCGAGGGACAGTTGCTGTGCTTGATCCAATTGTTCAGGGATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066704:ENSMUST00000077855:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=44.8)
A:
NA
C2:
PF0006717=p450=FE(11.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGAGTGTGCACTGAAGTC
R:
CAAGCACAGCAACTGTCCCTC
Band lengths:
358-2033
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types