MmuINT1008227 @ mm10
Intron Retention
Gene
ENSMUSG00000029190 | D5Ertd579e
Description
DNA segment, Chr 5, ERATO Doi 579, expressed [Source:MGI Symbol;Acc:MGI:1261849]
Coordinates
chr5:36619664-36629791:-
Coord C1 exon
chr5:36629657-36629791
Coord A exon
chr5:36619731-36629656
Coord C2 exon
chr5:36619664-36619730
Length
9926 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
CTGTCTTCTCTCTCACACAGAGC
3' ss Score
11.03
Exon sequences
Seq C1 exon
GAGAATGACATCTTGAGCTGGGAGAAAGGAGCTTATAAGAAATGGGGAAGGAGTAAGAAGAAGTGTTCTGATCTAACGCTGGAGGAGATGAAAAAGCAGGCTGCTGTCCAGTGTCTGCGCTCTGCTTCTGATGAA
Seq A exon
GTAAGTTCCTGCTTTCTCATGCTTGGGAGAGTGGGGTGGGGATACCCTTAAAAGTTCACACATACAATGACTGGATAAAAACAACCTAGAAATAAACCACTCAGCTTGCCATAGAGAGGCTAACATCTTTACTTTATAAAACCTTCCATATCTTGGGATTTTATTTTATTTTTTCATTTTCAGATAGGGTTCCATTATGTGGCTGGCCTGGAACTCAATATGTAGTTCAAACTGGCCTCAGGTTCACAGAGATCTGCCTATCTCTGCTTCCTGAGTGCTAAAATCAAAGGCATGTCCACTATGCATGGCCTTACATTTGGTTTTATAAAATATATTTGTAGGCTGCTGGTAGTGCACGATTTTAACCCAAGCATCTGGGAAGTAGAGGCAGGTGGACCTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCCAAGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAACAAACAAACAAATAAACAAACCAAAACCAAATACATATAAATATTTTTGTATGTAGCAGTCTAATTAGTGATACACCATTGTTTTAGACTCAGGTCCTTGAGAGTGCTCGGTAAGAGCTCTACTGAGCCATGTATCCCAACTCTATGCCTTTAAACAAGAACAAACCAGCCAACCAACAAACCAACCATTATTTCATCTTGTTGAATTTCATCAAATAATATTACAGCAGCACTGTAACATAGCAATCACTTCTCGGTAGCTGACTTAGACCTGATTTTCACTGTGCTGTCTGGATGCTGTGTGGGGCCTCTGTCGTGTGTGTGCTTCTTTTAGATATATTTCTAGAAGTAGGCTAGAATTTCTTATGTCCTGAGTACCATATTTGTTTATAACTCAGAATTGTTTTCCTTTTTTAGAAAATGTGCTTACTTTATTTTTAAAATATCTTTATATAAAAGTATATTCTGCTAAATTCGCTTTAGAATGTGATCATCTGTTTAAACAAATACTATAAATTCATATTTTGTCACCCACTCTTAAGATGAAACCTTTGAAATCTAACTTTGTGGTGAGATGGTGAAGTTTTAAATACTGTCACAGTGGAAGGTTGGATTGAGAGGATCCCAGCCTCTAGACTGAACCCAGGTGTCCTGTGCTGTGTCCAGTGCTGTGCTTGGCAGGTTGCTTCATTTGATGACCTGTGTAGTTTACTTGTTTGGCTGTATCTGCTGCACTGTATCTGCTGCTCGTGCCTTACTTGCTTCATGATAACTCCTTGTCCCAGTCCCTGCCCTGTCCTCTTACACCTATCTCCCACTGTGTTCTCAGCCAACTTATAATTGTTTGTAAAAAACCTGCTTTCTTGCCTGGGTATCTGTAATGGCTATTCCTGGTTGTCAACTTGACTATATCTCGAATGAACCATAACCCAAAATTGAAGAGCTCACCTGTGATCCAGATCTTGAGGCTGGAAGACAAAAGCTTTTGACCTGGATCTTGGCATGGAGATCTTGAGGATAGTGGCCATGAAAAGCTTAGGCCCGGTCAAGGTAGTACAGGCCTCTAATTCCAGGAGATTTCTGAGTTCAAGGTCAGCTTGGGGCAAAACAAGTCTCAGATTCAGGCGTGGTGGTATATACCTTTAATCTGGGCTACACCTTCTGCTGGAGACCTATATGACATTGGAAGAAGGAAGATTCCCTCTTCTTTGCCTGCTTGCATTTAGTTGCTAGCACATCTGTTGGATTTACTTCTTCAGGACTCCAGCTTATACAGAACACCAGGGAAAACAAGCCTTGTAGGGCTGAACAACTACTAGATTCTTGGACTCCCATTCACAGCTGACCATTGTTAAGATAGTTAGCCTACAGCCTATAAGTTATCACAATAAATTACCTCAATATATAGAGAGATTCCCTAAGTTCTGTGACTCTAGAGAACTCTTACTAATACAGTATCCTCCACACGAGTGCATCGCCCTGGGTCACAACTGCTAACCCTGGATTGTTAATTTGACTGTGCTCTTTGGAGGTAAGGATGGTGTTTCTTCTCTTTAAGAACTCTTCCATCGTGGGAATCCTCTTCCCAGCTCTTTTTCTTTCCTCCTCCCTTTGGACTTTTGAAATTATAAACTGCCTGAAGTCACTGCTCTTACACTGTGGTTCGGTGGACAGTGCTGGTTACTCTCCCCTGCAGTCAGACACTGCAGAACCCAGCAGCCCCGGCTTTAGGGAGGAAGTGTTTGTTTTGGTTCAGGGTTTTGGGGATTGCATTACATCTTGGTGGCAAAGGCATGGTGTGAGGCAAGGAGAACTTGAGGCTTGGTGTGTTAGCTTTTGGAGAATAAGGAGACAAAAGTTTGGTCCGGCTAGAAGCCTTCACAGGCCTGCTCATGGGCACCATGTTCCGAAGGCTCTATAACTGTGTTTGGCACTGCAAGCCAGGGGGATGTTCTCATACACATGAGCCCCTGAAGTATTTTCCAGATCCAGACCATAATATATGGCTCTATCATAGCTACCATTGCATTACTCAGAGCAAGAACAACCTTCATCTAATTTAAAAAAAAAAAAAAATAGAGTATAGGGATAAGATATAGGAATGTCTCACTGAATCTATGGGCTGGAAGAGGATCCTGAACTAAGAAGTGTAAACTTTAAATAGATAAAGCCATTGTTCCTAATAACCTAAAGTCTCCCATTGCCTTTTTCCCTGTTTGGGGGCCATTCTGTTCTTTGTGAATTCCACCTCTACTATAGCATACATGTGGTAAAAGTGGCCATTCTAGCCCCAGCTCATCATGACTTCTGGAGTATCCAATACGTGTGGAGTATCCAATGCGTGTGTCCATTCCTACTGTGATGAAGTGTGGTGTACAGACAGCAGAGAAAGATGGTGTGATTAGACAATCACAGATGGGGGTTAATAAAGTGACAAAAGTGTGAACTTGTTTTCTGGATACCATTTTCACATTATAAGAGGTGTGACGACAACCAGGCCAGGAGCAGAGAACACTCAAGGTGCGGTGTGGTTCCAGCCCACCCTGTCTAGGAGACTGGCCTTCTTTTCCTGGGTGCTTGGTTGGAACTGATGTATGTATGGTCTAAGAGCTTTCTTTGGCTTTCTTCTGAGAAACTCTGAAGTATTGGAGGGTTTGGAGAACAGGATAATACGGTATGACTTCATGCTTATAGCTTATGGCTGCTGCCTAGGGACTGGCCAGTGATGAACAGACTAGGTAAAGTTGGTGAAGAACCTGTGTGGAGGCAGGGGACCGAGGGTTGGAGAACATCCTGTGCTACATTGAGACTGGGAAAGTGAGGTAAAGCAGCAGCTGTTATAGTGGCCCTATGGCAGACCACCCAGTTGGGCTCTGTATTGAGGACAGAGCTGACCAGAGTGGGTGGGGGGATAAAGAAAAAGAAGACAGCCTGTGGTCTGAATACCCCTGGAAGTGGAGTTTCCTGTGTTTGGGGAAAGGAACCACAGGAAGGTACCCATCTGGTGGAGGGAGTGTGGGCACCTCCTGGGAGCCTGAGGGCAGGTGGCTGCATGTGCAGGTTCACTGAGCGGCTGTGGGCTTCAGAGGCCTTAGATAGGAGAGTGTGTTCATGCTGTGTATGGAGCCTGGAGCTTCTCTCTCTAGGAAAGGTGGAAAATTGAGCTTTCTGCAGAAACTCTTGATCTTTCAAATAATGAAAAGTGAGGCCCTGAGGAAAGTGGGAGGGGCTGTTCTAAAACCCTGCAAGTTCAGTAGCAAAGGACGTGGAAACAGGCCTGTGCAGGGAGCAGGATGAGGGCAGTTATACAGCGCTCACAGCTTGAGCCTCTTGCCCTCCTCTCCTTTCCCACGCCTGCTTTCCTCACTTAGGGTTACTTCACACGGTCTCCAGGCTCACATGAACGGCAGTGAGCTGTATTTGTTTTGTAACTTTCCTTCCAACACTTGAAATTTTGTTTATATATTCAGTCTTTTCATCCTTAAAGAGTTATTAGTAGTTGTCATCTTTGAAATATTTATTCTCTTACTAATTGTGATGGTTTGTATATGCTTGGCCTGGGGAGTGGCACTCCCCTCAGTCAGTTAGGAGGTATGGCCTTGTCTGAGTAGATGTGTGACTGGGTGTGGGCTTTAAGACTCTTCATCCTAGTTAGTTGGAAGCCAGTCTTCTAGCAGCCTTCAGATGAAAATGTAGAATTCTCAGCTCTTCCTGCACCATGCCTGCCTGGATGCTGCCATTCTCCTGCCTTGTTGATAGTGGACTGAACCTCTGAACCAGCCCTAATTAAATGTTGTCTTTATAAGAGATACATTGGTCATAGTATTTGTTCACAGTAGTAAAACCCTAACTAAGACACTATTGAATTCAACCTTTCCTATCACTATGTTCCCCTCTTCCTGTATATTCTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTGTTGAGACAGTATCTTACTTTGTAGCTAAGTCTGTATGTCCTGGAACCCACGGAGACTCAACTGCTTCTGTCTCCCAAGTGCTGGGATTAAAGGTGTGTTCTACCACGTAGGCGCTTATATATTTTTTGCAGTACCTTTTCTAGCCTATGTGCTGAGCCGTTGGCTAGATTGAAGACTTAGATTCTGGTATTTGACAAAAACCAGGCCAGGAGGAAATGTAAGCTTTCTCTGTGCAATAATTTTCATTCCTATTAGTGACCTTCCCTAGTCATACTTCATAGATGAAAGTGTCTCCTCCAGCCAGGCATGGTGGGTCATATCTGTAATCACAGCATTTGGGACGTGGACTGGAAGCTGGTAAGTCTAAGGTCAGCCTGGACTGTAGAGTCAGACCTGCCTCAAAAATAAATTAGTGAATAAGCAAGGTTCATGGCTTATTTTTTTTTTTTTTAAGGAAAGTATCTTATTGTATAGACCAGGCTGCCCTCAAACTGGCCATCCTCCTATGTCATTCTCCTGGTGCCTGGCATCTCAAACATGTGTCACCATGCTTGGCTGATGGTGTTATTTTATCATCACTTATAGCAGATGGTGGTAACCTCTCTTTTGAGGGTGTAGGAAAGGCAGTGCTGAACTGGGACCTGGGACTCACATGCCTAGACAGATACGCCACCACCAAGCTGTGTGCTGCCCCAGGTTTAACCTCTCCTCCTCATGTGCACCACCTCAGCAGTGTGCAGTCCTCCCTGGCGCGTGTTCATTCAGCAGATACTTCTCTAAGAGCTGGAGCCACTCCGGAGATCCTCCTGGGTTCAAAGATGGGAACTGTCAATCCTCATGGGGCCGTAGAGCAAAGAAACTTTTGGTTTGGGGATTTTCAATTCTTGTCCTGCTTCTTGGCCCTGATGGCAAGAGTTTTCGAGCTGGCTCTGTGCGCCCAGTCTTCTCAGTCAGTAGTCTGCTGCTTACTAGCTTAGCACGGACAGTTCCAGGTTTTGAGGGGTTTAAACCTTCAGGAATTAAAGTCTGAAGCTGGTCCTTGGCTCTCTTGTGTGCTGTCACTAGCAGCCATTCTTCCCACACCTTGCCTTGGTCTTTTCTTTCCCCTTCCAGCTCTGCTGTAGAAATGACATATTCTAACCATAAAACTAAAAGAGAGCCCTGTGCAGCATGGGGCTAAAATGACTGTATTTGATTTCAACTCTGTAGGTGAGCGGAGTTTGCTGGGAAGTTTCGCAGATCTTTTTTGTGGTACCATGCAGCTGCAGCAGGGTAGGACTGACTCCTGTCCTCACAGCACTGGTGCTTTAGTAGGCGTGGTCTGTGGAGCCAAGAGTTGGCATTCTACAAGTCCATGTGCCTCCATCGCTAAGGAGGCAGTGCTGGACAGCATGATTTACTGTAGTACTGGAGTAAGGGGCAGCCCTCTGGCACTCATGTTCTGGAGAAAAGGAACAGGCTGGGCTCCATTGAGAGAAAGCATGAGACTCCCTGCCCCTTGTTGGTGCCTGCTGGCCAGATACTGGCACGCAGAAGGGTGATCCAGCAGCAGGAAAACAGAGCAAATAAAAGACAAGGCAACCTCTGACATTCTAAGCAGGACAGTAAATAGGAAACAAACTTAGTTGAAAGACTTAGAGTATGCAGCCTGTGGCACTAGGAAGGACAGAGGAACTGAGAGATGAGGGACCAACCAGAACAGGAAGTCCAATAATCAGCTGCTACAACTGGTTTCCAGATGTGGAAACTTAGGCTGGGATAGGTAAGTGGATTATGTGGGGCCACCTAGTTTACCATAGCTTTAGAGGTGATATCTGAGTTACCACTTTGTGCCATGTTCAAATGGAAAATTTAAGACTGAGCTTTCAGCCTGGCAGTGGTGGTGCACACCTTTAATTCTAGCACTTGGGAGGCAGAGGCAGGCAGATCTCAGAATTTGAGACCAGCTTGGTCTAAAGATTGAGTTGAAAACCCTGTCTCGAAAAATGAAACAAAACAAAAGGGATGTGCTTTCATGCTGGGTGCCCTCCAGTAGCTTAGGGATACCCATCTCACACTGGGAGACTGTCCAGTGCAGTGAGCTCTCCTTGAAAGAACAACCTAAGATGCTTACTGCAAGTCTTTGGCCATGGAGAGGGCAGACAATGAGGAGACCAGTCCAGTCACCTCTTCCTGACTGATACAGCTTTAAATTGAGAAGCACAGGAAGCCTGGAGACAGTTGGAGATGTCTGAGAATTCTGTGGGGTGAGAAGCAAGGGATGAAGGAAAACCTCCTAGAAATAGCAGTTACAGCAGCTGTAAGCCGTGACCAGACTCAGTTTATATCATCAAGTAACAGACCTAACCTTGTCAGGCAGCCACCAGCAGAGGAGGACAAAAGCCAAGACCAGGCCAAGGTGGCTGCAGAGAGCAGCCCACAGGGGTACTTTGTTTGCTAGAGGTGGTCTTGGTGTTGAATAGGCTAATAATAATAGTAGTCCAACTCAGACCCTGAGGTCTGGCTCCAAATCCAGATCCTCAGACACTGAAGGCAATTTTGAAGGAGTGAACATACAGAATTTAGAAATGACACTGGTACTTAAGTAACCTGGGTTACAATGAGCTCTGTCTGACAGGTACATCACCCGTGTGCTAACTAGGTGAGCTTTGAGAGAACTGGAGGTATTCTTAGGTTATAGAGCTGGGAAATAGGCATATCCCTGTGTGCGGTAGGGCAGGAATTCAGAGCCAGATGTGGAGATATCAAACTAAATCTCTACCACCTACCTCTGTTCTCAGAGAAGTAAGAGGTAGTGCCATGTACTTCTAGGAGGACAGGTCCTTATTGTCCATGGGACCTGTTGGGCATGTGGGCTACCAGTCTCTATCACTTGTACAGTGGGTGAGAGCAGATGACTGTCCAGTGAGTGTCTAGCCTTGCTTCCAGGGGCTGCCTTCTAAGTAGCTCCAGTTCATGCCTACCCTGCTCATGCTCACTGCATGTTAGTGTGCTCTTGCTCTGCACAGCACTTCCCAGATGCTTTGGACACTTGATGGTTGAGTTGGTACAGTGAAGAGAGGCCAGGCAGGGTACCACAGCAGAGTCACCGCATCTTGTTCCCACAGGTGTTCCTGTGGGCTTTCTAGAACATAGTACGCTTTATCCTTTGTCCCTTCTTAAGACGCCTTTAGATAAGTATTTTCCAGCAAACCTATGGATGTGATAGACTATGGCAGTATAGGTAGAAATGGAAATGAAATTTCTTAGTTTTAAATGAACTCTAGAATACTTGCCAGCATATGATAGTATGACGGATGACTTTATGCTTCTCAGTTTGCTATTAGGATACCGTGATGACCTAATGATTATTAAAAATAATAACTAGAGTAGGTTCAGTCTCCAGTACTGTTTTTTTAAAAAATGTGTGTGGTATTGGTGGTATGTGTTTCTCTTGTGTGTGGGGGGGGGAGGGGGGGTGCATACACACATGCAGGTAAAAAAAAAACACATTAGCTAAGGAAAGAAAACAGAAACCTGATCAGTAAAGCTTGATTTACACAAAGGAAGGAGTAAAGCACTGTTTCTTAATGCTGCTTGTATTTGAAAACATAGGCATTTTTATATATAAAGATATATACATATGGACATATACATATGCTCTTTGAATGAATGATAATATATTGTTTATTGTTTGTATATATATTGCTTTTATATGTACTAGTTGTGTGTCTGTGTAGTTTATACTAACTAAAAGATAATATGAGTACCCTGCTCACAGGTTGTCATGGCCATTCTGCAGGCCTGAAAAATAGTAGCCTATTTTAGAGGTTGGAAGGAGTTTGGTAAGCAGTCCCCAGAGGTTCCATGTTCTGCACTGGAGATAGCCCCAGGTTTGCAAGCAGTGACATAGGCTTGTTGTACAAGACAGCGTGTGGCGTGTCAGCTGACACCCGTGTTAGTTTCTGTATCCTGGAGAAGTGGATTATAATTGCGGGCCTCATTACACCTTGACCGTTATGGTAAGCAGACTTCAGTGATGGGATTGTGCAGTCTACCACTGTTGAACAATTGTCTGCCTGTTTTTTAGAGCTGTAAGAAAGAGGCAGCTGTCCTCTGACCTATTTTCTCTTTTCCCTCTTAAAGACTGGGATATTCTGCAGATAGAGAGTAACTGTGGGTATTTACAATTTACCTTCCTATCTGAAATCTGTTTCTTCTAGCCAAAACTCTGTAAAGGGGGCTTTTTTTAAAAAAGAAAAAGAAAAAAAGAATATCTGCCATACTTTGCTGAGTCATTTTGAGTTCGGCGAATGGGTAAAGTTTATTTTTAGCTCTTGGAGTCACAGAGCGGAGGCACAGGAACTTGGGTGGCTCTTCTGTGTGCATCTGGCCAGCTGTGTCCTTTCAAAGAGACAAAATCCAACCCAGACATAGCATGTCCCTGAGTAAATCCAAAGTTTCTAAGAAACACTGTAACTCTTCTGTCCATTGTACAATATTTTTTCTGTTTTCTTGCAGAAAAAAATGAGAATTTAGAATGAGTGAAAGATATGTACTTGTGCTGTTTCAAGTGCAAATTTTCTTTGAAGCTTGCCTCACTTTATCTTCAGTACCAGATCCTTTCACGCCCTCTCCGTATGCCTGTGGAACTTAAGAAACATGTTCTGTCCTTGCACACTTGTTGGTACTGGGCACTGAATTCTGGTTGTCTGCTTGGTGGCAAGTATCTGTACCACCAGCCGAACCGCCTCACTGGTGGGCCCTGTGTGGTTGGGTCCATCTCTTAAAATAACCGAGAGCTCCCATGTGTGCTTTCAGCATTGGCCTGTGTTCTGTATGGCTCTTTCTGCTGGAGTTGTGAGAGTTCACTTTAAAAAAAGAAAAGAAAAGAAGAAGACAAGGAAGGGAAAGGGAAGGGGGACCTACTTTGTTTTCTTTAGGCTCTAATCTTCTAGAGACTAAGGAGGTTTTGTAACCCCTGTGTTAAATTTGTATAAAACCATGATTATAAAGAATCTTAAGGTTGCTTTTGTGGGTGACTAACTTTTGTCCAATGATGGACACATAGATCTTTGGCCTTGTTGAGCAAGACAGAAGCCTTTCTTGGAGAGCATTCACATTGCCACAATGTATCAGTAAGTCCCACTTAGTGTCCTTCATTAGTAAGATGCTTATGGTAAGCTGGGCAGTGGTGGTACATGCCTTTAATCCCAGCACTTGAAAGGCAGAAGCAGGTGGATTTCTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAATCATGTATTGAAAAACCAAAAAAGAAAAAAGAAAAGAAAAGAAAAAATACTTACAGTAGGTTAGCTTTACCGGTTTTTAAACTCTGGGATTCATTTAAGAATTGATAATATATTCCTTTTGGAACATGGAAACTTGTGGTCCTCCGTAGTGACATAAAATAATTGCCTGTCTACTGTGCCTGGTAGAAAGCTGACTGTCTTCTCTCTCACACAG
Seq C2 exon
AGCTCTGGGATCGAGACTTTAGTAGAAGAGCTCTGCTGCAGACTGAAAGACCTACAGAGCGAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029190:ENSMUST00000031091:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF153761=DUF4603=FE(3.4=100)
A:
NA
C2:
PF153761=DUF4603=FE(1.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types