MmuINT1019598 @ mm10
Intron Retention
Gene
ENSMUSG00000108022 | Gm7298
Description
predicted gene 7298 [Source:MGI Symbol;Acc:MGI:3648717]
Coordinates
chr6:121776773-121778779:+
Coord C1 exon
chr6:121776773-121776824
Coord A exon
chr6:121776825-121778695
Coord C2 exon
chr6:121778696-121778779
Length
1871 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CCCTTTATTTGCTTATTAAGATG
3' ss Score
6.43
Exon sequences
Seq C1 exon
CCTGAAGGAATCAAGATTGAGCATACCTTCAGCTCACTGTTGTGCGCATCAG
Seq A exon
GTGAGAACCTTTCAAAATAGCAATGAGGCAGTAACTTAAGTCGCCTACTTCAATATCTTGCAATATTCCTATAAGAAAATGGGAATACTGTCTACCTTATAAACCCTAAAACACTAGCAAAACTAAGTCTTGTAAATGAAGATCATCACTTACCTCAAGCAGCTCTCAAGAGTATAGTTCCCCTGGGACTACACAGTTCACTGTAACCTTTTTTTCTTTAACTATACTGGAGCCTCTTCATCCATTTCAATACTTAGAAAGATATAAAGAGGGAATGACTGAGATGAACTCACGATTGAAATTTTCTTTTAAACAGGGGGAGGTTGGGAATATAAAGAATATCTTGGGAAGAACCATATGTGTTTTGTGTTAGAGCATAATAAAAACAAAGATTTATATGGTTGTAAAATTTCATACATGAGCCAAGCAAAATCATGGTGTGTACTTAGCATGACATTTTTCTCCAGTGGTTGTTTTATGACTTGCTCATTTATCCCTGCTGCTCACTGGAAGCTAACTATTACAGAGAAAATATTGCAACTTATCCCACAAGAGGAAGTTCGCTGTTGCCTATGAGGGACAAGCATAAGGTCAGGGACTGTCCACTCACAATAATGACTCCAAAGCTGGCACCTCTGTTAGCAAGTCCTTGTAGTGTCTACTCAAATCATATTTGTCAAAAGAATAAAGAATTTATATTTAATTTAATGTCAAATCCATTATTATATGAAAGTTAACAAAAGAAATGAAATAATGCAAACTTTTTCATAAAGAATGTAAACTACCTTAGCAACTCCTAATACAGCGGGTGGAAGAAAATCACCATATAACACCAAATTTCTTTTAATGTTTTCCATGAAAGAAAGAGCGAGAAGGGGATCATTGGAGATAATTTAAAAAAAAAAGCCAAAGATAGGATAACAAAAGCTGTATACTTCCCACCGGTCAGCTCTGCTTCCCATCATAGCTACTGATTACAAGGCAATCCACCCACCATCCCTGCCATAGGAAAGCCACCCGGGACAGCTACATGGGATCAGAGAGCTTCCCAAGCAACTCAGGGACCAGGAAGAGCAAAAGGTCACTCAGGATTTCTCCATTCACTTATCCGGGCACACTGGATGTTTACGCAAACATTGCTTGGTTCTAGATTTCCATCCTTGAGATAAAACACCGTGACTAAAGCAACTTAGAGAGCTGACCATCTTACATGCTCACAGTCTATCATGAGGCGAAGGCAGGGCAGGAATCTGGAAACAGGAACTGAAGCAGAAGCTATGGTGGGGTGCAGCTTCCTAGCTGCTCTGTCCTTGCTCCGATTGCTTTCTTATACTCCACAGAATTCGGACACTGGGTCATGACCTATCACATCTATTGTTAAAAAAGAAAAGCTTCAAGACTGGCTCATAGCCCAGTGTTAGGAAGGCATTTTCTCAATAAAGGTTCCCTACTCCCCAAAAAACTCTAACTTATGTAAAACTTCACACACACACAGATACACACACACACACACACACACACACACACACACACACACACAGAGGATTTTTGTACACCAAAATTAAACCAATAACACATTTTTGTGTGTTTATTAAAACTGAGTAGGGCATTGATAAAAATAGAAGAACACAGATCATAGAGGCACAGATGTTCCATTTTGGAAAGATGCTTTGTTCCAAAGCAATGGATGATAAGAGATCATGCCCTGAGCTTGACAAACCTGTGGTACCAGGAATCATGGATTTGGGATATTTACCTCTAAATCACTTTTCTAGGGAAGCAACAATGTAGCTCTGAAGACTCTGAACTTAGGACTCTTTAGATATGCAGAGTACAGAGATGATCATCTACCCCTTTATTTGCTTATTAAG
Seq C2 exon
ATGCTGAGATATCTGAAAAACTGTCCCTGGTCCTCCCACCAACAGTCGTTAAAGATTCAGCAAGAGCCCATTTCTCTGTGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000108022:ENSMUST00000204124:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types