GgaINT0117847 @ galGal4
Intron Retention
Description
NA
Coordinates
chr1:75617057-75617500:+
Coord C1 exon
chr1:75617057-75617108
Coord A exon
chr1:75617109-75617416
Coord C2 exon
chr1:75617417-75617500
Length
308 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
CTGGCTTTTCCCTTCATTAGATA
3' ss Score
7.24
Exon sequences
Seq C1 exon
CCAGGAGGCATACTACAAGAGAAGACCCAAAACGCCTTTCTCTGTGCTACAG
Seq A exon
GTATGAAACATAATTCACTGACAGCTATCAGGATGGAAGGGATGGAGCTACTGAAGGTACCCAGAGGTGGGGGGAATTTGTCCAAGAACAAGCACCTGTGGCACTATCCATGCCTAGGAGAAGAACCACTGTAGTTTCTTCATATCTATCTTCTGCCTGACACCGTTTTCTGTATGAGGCATATATTTTTAGGTCTCAGCTTCTGTGACTCAATTTCACACTCATTCTCATGTAGGCCTCTTTGGGTTGTCTCAATTGTGTGTGATAAATTTTCCATTGAGTAAATTTCTGGCTTTTCCCTTCATTAG
Seq C2 exon
ATAACACAGTCTCTGAAGAATTCTCCCTGACCCTGCCTGCAGAAACGCTGGAGGGATCTGGTCGAGCCACTTTCTCTGTGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014252:ENSGALT00000023051:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]