BtaINT0010557 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004097 | A2ML1
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr5:101516873-101517368:-
Coord C1 exon
chr5:101517317-101517368
Coord A exon
chr5:101516957-101517316
Coord C2 exon
chr5:101516873-101516956
Length
360 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
CCTTTCTCTGTCCCTGACAGGAA
3' ss Score
11.45
Exon sequences
Seq C1 exon
CCGGAAGGAGTCCTTGTGGAGAAGACACACAGCTCACTGCTGTGCCCAAAAG
Seq A exon
GTGGGTGAACACAGAGAGGGGTTGATGTGAGAATTCCCTTAGCAATAGATTTTCTTAGGCAAAAGGAGGAATCTACAGGACAAGAAAAAAATAGGAGAGTCTAGGGGTGCCCTTCCCAGGGGAGCCAACTAGCAGAGAGGCAGGAAAAGAAGAGAAATCGTACAGCACATTATGATGCTGGCTGGAATTTATTTTTTGCAAAGACCGCTATGAATAGTAATAAAAAAATCTACCTCCAACCCACAGAAAGCAGTGGTTACAGAAAACCCCGGGTGATGGCAAGTTTTTCTATGGTTTGGGCTCAAGAAGCCCCACTACTTCCACCTTTCTAGTGTTTTACCCTTTCTCTGTCCCTGACAG
Seq C2 exon
GAAAAGTGGCTTCAGAATCTATCTCCCTGGAGGTCCCTGTGGATGTTGTTCCTGATTCAGCCAGGGCTTATGTTGCTGTTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004097:ENSBTAT00000037825:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]