MmuINT1022487 @ mm10
Intron Retention
Gene
ENSMUSG00000026792 | Lrsam1
Description
leucine rich repeat and sterile alpha motif containing 1 [Source:MGI Symbol;Acc:MGI:2684789]
Coordinates
chr2:32961044-32961614:-
Coord C1 exon
chr2:32961562-32961614
Coord A exon
chr2:32961256-32961561
Coord C2 exon
chr2:32961044-32961255
Length
306 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
TGCAATTCCTTGGTTTCTAGAAT
3' ss Score
6.75
Exon sequences
Seq C1 exon
TGTTTCTTATGGGCAGGCGTCTGCGGCAGAGGACTGCAGAGCTTGGTCTGTGG
Seq A exon
GTGAGCTCGGGATTCGGAAGGGGTAAATGTTCGGAGCACCTTGCCTGGGCAACAGAGTAGGGCTGCACCAGAGGTCCTGGTTCCTGGTCCACGTTCCCTTCTCTTGACGGTGACTCTGGAGCCCCTGGGACCCAGCCCAGGGCCCCGCCCCTCCCCTAAGGGATCTGCACCTGACTTGAGCGACCCTAGTACCAGTGCCACCCTAGTACCCTCCTAACCTGTTTGCGGTATGTGCATGTTAGTTACAGAAACAAACTATTCGAGTCTAATCACGAGTCTTTAATTCTGCAATTCCTTGGTTTCTAG
Seq C2 exon
AATCTCGAGACTTTGTCATCCTGAGTTGCGTGTCTTTCTGAAATTTAAAGTTTCGGTGCTCACTTCTATGTTTGAAGGAGACCGGACACCAGCTCAGCTTTTGGGGGCCAATGGTTTGTATCTGTGGCCAAGTCTTCGGAGTGACTGGCCTACCTTGAGGTCCACCCAAGAATCGGAACATCGGTGGAGGACCTCCCCATCCACAGAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026792:ENSMUST00000113200:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTCTTATGGGCAGGCGTC
R:
GCTCTGTGGATGGGGAGGTC
Band lengths:
262-568
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types