MmuINT1023813 @ mm10
Intron Retention
Gene
ENSMUSG00000030739 | Myh14
Description
myosin, heavy polypeptide 14 [Source:MGI Symbol;Acc:MGI:1919210]
Coordinates
chr7:44655592-44657440:-
Coord C1 exon
chr7:44657417-44657440
Coord A exon
chr7:44655685-44657416
Coord C2 exon
chr7:44655592-44655684
Length
1732 bp
Sequences
Splice sites
5' ss Seq
TATGTGAGT
5' ss Score
5.56
3' ss Seq
CCGTCTCCCATGCCCTGCAGGGG
3' ss Score
9.24
Exon sequences
Seq C1 exon
GCCTCCGTCAGCACCATGTCTTAT
Seq A exon
GTGAGTAGCAGGAAATCCTCTTGCCACCCTAGTGCCACCCAGTGTCACTTGGGGCCACCAGCCCATAGCCATCCAGGAGACAGTGTCCGAGAATGGCATACCCGCCCCACAGGCACCCACCAAGCCATTGCTGACAGTTCTGCTCTGCACCTGCTAGGGCCACATGGCCCTCTAGCTCAGACAGACTATGTGCATGAAGTCAAGGTTGTCTACTGTTGCCATCAGCCCCACTGTGTTCAACAAGTCATAGAAAGTCCCTTATGTACAGACAACCATACGTACCCTGCCCTTCCTGGCAGCCTTGGCATGTGTATGTCCCTGGGCCCTGTACTGCTATTTACTTGGGTCTCCCTGTCTACAAAGATGGCTCTCCCACATTGTTTGTTCCAGGCCTGCTGTTGTGCTCATGTTCAGGCCTCATACTGGCATTTAATGCAATGCATGTGGCCAAGCACCCTCTCATTATACCAGCTCTACTGTATTCACGGGCCTAGACCCCATGCTGTCACTTATTACAGTCCTACTATGTGCCTGTAATTGCTCCCCTCTCCCAAGTATTCACGTGCACAAAGCAGGGGTCTTTGCCACCACTCAATGTGACCCCACTATGTGCACATGTCCAGACTCCATGTTGCTTTTAGTGCAGTCCTACTGTCTGCACAGAGCCATGCCCCCTCTATTGCTCATGGAAGCCCTAATGTGTCAATGCAACTAGGTCCTTACTGGCAGAGAAGCCATACTGTGTGCACACCCCAGTCCTACTCTATGCAGCCTGGGTCTGTACTGCCTGCCATGTGTACAGAGAGAGGCCACAGATACCATCACGTGGTAACCCAGACACCCAAGCCACTCCTCCCAGGCGGGCTGGAGAAACAAGCTTTCATAGAACCTGGCCTTACTTTGCACATCATCTTTTTTGTTTGTCTTTTTTTTTTTTCTGGAATAGGATCTTATTTTATAGCTCAGGCTGGCCCCAAATTTGCTCTATAGCACATGCTGGTCTTGAATTTATATCAACTTTCCTACCTTCTTCATGTTCCCAAATGCTGGGATTACAGGTGTGAGCCACCATGTGGGGCTGTGTTTGTTTGGTTTTTGTTGTTGTTGTTCATTTGACAAAGCCACTAACTGGTGTAGACTGAGAAAAACACATGCAGCACATTTATTGAGCACCTACTGTGTGCCTGGCTCTGAAACTGGAGGAGCTAGAAGTAAGCTTAGAATAAGGAACTGCCCTCACAGCACAAAACTACCAGTTATTGAATGCCCACTGTGCACCAGAGTGTTTGAAGCATTTTCTATGGGTAGTGAATTACATATTATTCTCTAAACTCGTTTCCACAAGTGACGTATGGGGACCTGTGAACCGCAGCAACGTTTTCGTGGCTGACAGTTTGATGTGCACCCTTCCAGACCTCTCTCCCTATGCTTACTATCGTGTATGTTTGTAGAAATAACCAGGTTGTTTGTGCTGTAGTTTCTAACCTGCTTTGTTTCTTATTAATGGGAACACGACTGGTTCTGCAACATTTTTCCCCTTTGTTTGGTTGGTTTATGTGCACTCAACAGTAAATCTCCAAGAATTTTCTCTGTTCCCCTCACTATACACATGGCAGGCAAGACTCTTCCACCCTGATACAAAAGGCCCCACCCAGAGAAGGCCAGCCCGACGCCCTGACCCCATGAGGGATTCTCCCTGTCTCACTAATGCACCGTCTCCCATGCCCTGCAG
Seq C2 exon
GGGGAGCTAGAGCGTCAGCTTCTTCAAGCCAACCCCATCCTAGAAGCCTTTGGCAATGCCAAGACGGTGAAGAACGACAACTCTTCCCGATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030739:ENSMUST00000048102:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.018
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(1.0=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(12.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types