BtaINT0097212 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002580 | MYH14
Description
myosin, heavy chain 14, non-muscle [Source:HGNC Symbol;Acc:HGNC:23212]
Coordinates
chr18:56882095-56884842:+
Coord C1 exon
chr18:56882095-56882197
Coord A exon
chr18:56882198-56884749
Coord C2 exon
chr18:56884750-56884842
Length
2552 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
3' ss Seq
CATCCCCCGACGCCCTGCAGGGT
3' ss Score
7.01
Exon sequences
Seq C1 exon
TGGGGAGTCCGGGGCCGGGAAGACAGAAAACACCAAGAAAGTCATCCAGTACCTTGCCCACGTGGCATCATCACCAAAGGGCCGGAAGGAGCCTGGTGTCCCG
Seq A exon
GTAAGTGACCTGCCTTGGGACGTACTCTGGAGCCTGCCACCAGATGCTCCCTCCCTCTCAGGCTCTGCTTCCCCTCCTAAGTAACTCCCCACCTCTCCCATGGAAGAACACAGTCACAGGCCTTCTCCTGGCTGCCTCTGCCCCACCCCCACCCCTGAATCCCTACTATGTGCCTGATATATATAGTGCTGGGAGCCGAGGCAGGATGGACATAAAAATTGCAACAGCCAGTCCTTCGCCTCATTGACCCTTGGAACAGTGCCTCTGGCACATAGTAGGAGCTTACATCCCAGAGCACCCACTATGTGTCTGGCCTGTTTAGGTTCCTGCAGTGCCCAGGTTTGCTTTGTAAGTGAGCGTTTATATATAGCCCTAGTCCTTTGACTTATATTACTGTAACGCCCCAGTGAGGTGGGTGTGGTTTAAAGATGGGAAAGCAAAGTCACACCTGGGGTGGGTCGGCTGTCCAAGGTTACACGCCCAGGAAGGGCTAGCCCCGATTCAAACCCCAGGTGATGGGGCCGCCGCCCGCTCCCCACCCCCAGGCACCCCGCTCCACAGGCCAGTTTCCCCAGCCCCTTGTCTCTCTATCCCACCCCCTGCCCCTCCCCCAACCTCGTTCACCTGTGTGTCTGTCCATGTTCCATGTGCCGTGTCCTGGTCCGTGTCTCGTGTCCTGTGACTTCCTCAGGCCTCCGCCAGCACCGTGTCTTATGTGAGTAGCAGGGAATCACCTCGAGTCCTGCCACCCCTAATACCACCCGGGTCACCCCAACCCACAGTCTTCCTGGCAGACAGGTCCCAAGGCACTGACGGTCACCCCTGCCTGGAGGCCACATTGTCACTTTTGATGGCCCTACTATGTGCACAGCAGGCGCCACACTGTCATTTCATGCAACCCTACAGTGGGCACATACCCAGGGCCCCCCACTGTTGCTTATGGCAGCCCAACTGTGTAGTGAAGGACAGCGAAGCCTGGCGTGCTGCAGTTCATGGGGTTGCAGAGTCAGACACAACTTAGCGATTGAACAACTGTGTGCACACAGCCAGGGCCATTTCGTGTGGTCCTGTGGTGCATGTGCAGACCCTACCACATAGCTGTGTATATTAGCCCTACTCTATCTGTGCAGAGCAGCCACAGATCCCAGGGGGAAGCAACCCAGAGCCTATAACTACCATTTATTGTTGATCTGCTAAATGTATGTAGGCAGAGCCCACAGACACCACGCTATCACACAGCCCAGGGACCCACAGGGCCATTCATGGTAGGCAGGCCTACTCTGTGCCCCCAGCTCAGGCTGGTGTCTGAGGGCTCACAGGGCATTTAAAGAAACAGTCGGGATCTTTGAGAGCCTGGTTAGGAAAGAGGAGAAGAGGGTTGTCATGTATTGAGCACCTACTGTGTTCCTGGCTCTGACACCCAAGTGGCTGTAGGGAAGCTCAGAATAAGATCTCTAGCCATGGGGGCCCGAGGAGGGATAAATTGGCAGTAGGTGATTAACAGATGCATACTACCATGTATAAAATAAATAAACAACAGGGATTTACTATATACCCAGGAAACAGTTGAATTTCCCTGGAGTCTCAGACAGTAAAGAATCTGCCTGCAATGTGGGAGATCCGGCTTCAATCCCTGGTTCAGAAAGATCCCCTGAGGAAATGGCAACCCACTCCAGTATTCTTGCCTGGAGAGTTACATGGACAGAGGAGCCTTGCCAGCTGCAGTCCACAGGGTTGCAGAGTTGGACACAACTGCACAACTAGCACTTTCATAGGAAACAGTAGTCAATATTTTGTAAGTTTTAAGGGAAAAGAATCAGAAAAAAATATATATATATCCAAATCACATTGCTGTACGCTTGAAACTAACTCAGTATTGCAAATCAACTATACTTCAATTTTTTAAAACTGCTGTCTTAAAAAAAAAAAGTCCCCACTCAAGGATTAGCCTGACTGGGGAAGGAAACTACCATTTCTTGAATGTGTACTCTGTGTCAAACAGTTTGAGGAACTCTACATAGATGGTATAGATTTTTCTTTAGGTCCACAGGGGATACATGAGTATGCATTCACTGCAACAACAACAAACAAACCAGGCAAAATGAAATTCCTCTTTCCTTCTCTCAGTCCTCTTTCCTTGGAGTGGCTTACTCTGTTGATATTTTGGTATGTATCCTTGCAGACCTTTCTCTAAACGTCTACAAACATGTATCTATACGTATAGATATGGGAGTCTTGTTCTGTGGTGTTGTTTTCTCGGTTCATTTTTTTTTTATTATTATCAATAGGATCACATTGTAGGTGTTGTCCTGAGACTTGCTTTTTTGGTTTTGTTTCCGCTGGACAATGGATCTTAGAGAAGTTTCCTCATTCACTTCACAACAGACTGAAGGGCAAGCCCAGATCCGGGAAAGCTGGCACACGCCCAGATAGACACACAAAGGCCCCTCACACACAGACACTCAGCCAGACCCCCCACCCCAACGGGGCCAGTGCCCTCACCCCCCCGCCCCGACCCCGCCACTGACAAGCCATCCCCCGACGCCCTGCAG
Seq C2 exon
GGTGAGCTGGAGCGGCAGCTTCTTCAGGCTAACCCGGTCCTGGAGGCCTTTGGCAACGCCAAGACGGTGAAGAATGACAACTCCTCCCGCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002580:ENSBTAT00000003343:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.300 A=NA C2=0.048
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development