MmuINT0103366 @ mm10
Intron Retention
Gene
ENSMUSG00000030739 | Myh14
Description
myosin, heavy polypeptide 14 [Source:MGI Symbol;Acc:MGI:1919210]
Coordinates
chr7:44657417-44658037:-
Coord C1 exon
chr7:44657935-44658037
Coord A exon
chr7:44657441-44657934
Coord C2 exon
chr7:44657417-44657440
Length
494 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGC
5' ss Score
3.69
3' ss Seq
CTGTCCTGTGACGTCCTCAGGCC
3' ss Score
9.82
Exon sequences
Seq C1 exon
GGGAGAGTCTGGCGCTGGGAAGACGGAGAACACCAAGAAGGTCATCCAGTACCTGGCCCATGTGGCATCATCTCCAAAGGGCAGGAAGGAGCCTGGTGTCCCT
Seq A exon
GTAAGCCACACGGCCTTAGGACACTCCAGACATGTCACCAGTAGCATCTTTTATTTTGGGCTGCACTCCACATTCACAGTTGGTTCAGGGCCCTATGTCTTCCCGTGCTACCTGGACACCTACTGTGTGCTCATTTGAGAATGGTGCTTTGGTGCACACTGCATGCTTCATTTTGAGGCCTGATATTAGGTGACCTGTGTCCAGGTTAGGGGGGCGGTAGAGGTACCCCTAGCCTCTGAGCCCTCAGGGAGTGGTTACCAACAATACTCATACTTACAGGAAGCCCCAGTCATGGTGGGTGAGTCCTGATGGGGGCAGAAGGAGGTGGTACAGTGAGACTTAAGCCTGGCACAAAATCTGCAAGGTTTCCCTGTCGCATGCTCCCTAGCCCCTTGTCCCCAGCTCTACCCTAAGGCCTCCAGTTCACCTGCATGTCTGTCCATGTTCCATGTGCCGTGTCCTGGTTCGTGTGTCCTGTCCTGTGACGTCCTCAG
Seq C2 exon
GCCTCCGTCAGCACCATGTCTTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030739:ENSMUST00000048102:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.284 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(14.0=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(1.0=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types