MmuINT0103366 @ mm9
Intron Retention
Gene
ENSMUSG00000030739 | Myh14
Description
myosin, heavy polypeptide 14 [Source:MGI Symbol;Acc:MGI:1919210]
Coordinates
chr7:51910962-51913407:-
Coord C1 exon
chr7:51913305-51913407
Coord A exon
chr7:51911055-51913304
Coord C2 exon
chr7:51910962-51911054
Length
2250 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGC
5' ss Score
3.69
3' ss Seq
CCGTCTCCCATGCCCTGCAGGGG
3' ss Score
9.24
Exon sequences
Seq C1 exon
GGGAGAGTCTGGCGCTGGGAAGACGGAGAACACCAAGAAGGTCATCCAGTACCTGGCCCATGTGGCATCATCTCCAAAGGGCAGGAAGGAGCCTGGTGTCCCT
Seq A exon
GTAAGCCACACGGCCTTAGGACACTCCAGACATGTCACCAGTAGCATCTTTTATTTTGGGCTGCACTCCACATTCACAGTTGGTTCAGGGCCCTATGTCTTCCCGTGCTACCTGGACACCTACTGTGTGCTCATTTGAGAATGGTGCTTTGGTGCACACTGCATGCTTCATTTTGAGGCCTGATATTAGGTGACCTGTGTCCAGGTTAGGGGGGCGGTAGAGGTACCCCTAGCCTCTGAGCCCTCAGGGAGTGGTTACCAACAATACTCATACTTACAGGAAGCCCCAGTCATGGTGGGTGAGTCCTGATGGGGGCAGAAGGAGGTGGTACAGTGAGACTTAAGCCTGGCACAAAATCTGCAAGGTTTCCCTGTCGCATGCTCCCTAGCCCCTTGTCCCCAGCTCTACCCTAAGGCCTCCAGTTCACCTGCATGTCTGTCCATGTTCCATGTGCCGTGTCCTGGTTCGTGTGTCCTGTCCTGTGACGTCCTCAGGCCTCCGTCAGCACCATGTCTTATGTGAGTAGCAGGAAATCCTCTTGCCACCCTAGTGCCACCCAGTGTCACTTGGGGCCACCAGCCCATAGCCATCCAGGAGACAGTGTCCGAGAATGGCATACCCGCCCCACAGGCACCCACCAAGCCATTGCTGACAGTTCTGCTCTGCACCTGCTAGGGCCACATGGCCCTCTAGCTCAGACAGACTATGTGCATGAAGTCAAGGTTGTCTACTGTTGCCATCAGCCCCACTGTGTTCAACAAGTCATAGAAAGTCCCTTATGTACAGACAACCATACGTACCCTGCCCTTCCTGGCAGCCTTGGCATGTGTATGTCCCTGGGCCCTGTACTGCTATTTACTTGGGTCTCCCTGTCTACAAAGATGGCTCTCCCACATTGTTTGTTCCAGGCCTGCTGTTGTGCTCATGTTCAGGCCTCATACTGGCATTTAATGCAATGCATGTGGCCAAGCACCCTCTCATTATACCAGCTCTACTGTATTCACGGGCCTAGACCCCATGCTGTCACTTATTACAGTCCTACTATGTGCCTGTAATTGCTCCCCTCTCCCAAGTATTCACGTGCACAAAGCAGGGGTCTTTGCCACCACTCAATGTGACCCCACTATGTGCACATGTCCAGACTCCATGTTGCTTTTAGTGCAGTCCTACTGTCTGCACAGAGCCATGCCCCCTCTATTGCTCATGGAAGCCCTAATGTGTCAATGCAACTAGGTCCTTACTGGCAGAGAAGCCATACTGTGTGCACACCCCAGTCCTACTCTATGCAGCCTGGGTCTGTACTGCCTGCCATGTGTACAGAGAGAGGCCACAGATACCATCACGTGGTAACCCAGACACCCAAGCCACTCCTCCCAGGCGGGCTGGAGAAACAAGCTTTCATAGAACCTGGCCTTACTTTGCACATCATCTTTTTTGTTTGTCTTTTTTTTTTTTCTGGAATAGGATCTTATTTTATAGCTCAGGCTGGCCCCAAATTTGCTCTATAGCACATGCTGGTCTTGAATTTATATCAACTTTCCTACCTTCTTCATGTTCCCAAATGCTGGGATTACAGGTGTGAGCCACCATGTGGGGCTGTGTTTGTTTGGTTTTTGTTGTTGTTGTTCATTTGACAAAGCCACTAACTGGTGTAGACTGAGAAAAACACATGCAGCACATTTATTGAGCACCTACTGTGTGCCTGGCTCTGAAACTGGAGGAGCTAGAAGTAAGCTTAGAATAAGGAACTGCCCTCACAGCACAAAACTACCAGTTATTGAATGCCCACTGTGCACCAGAGTGTTTGAAGCATTTTCTATGGGTAGTGAATTACATATTATTCTCTAAACTCGTTTCCACAAGTGACGTATGGGGACCTGTGAACCGCAGCAACGTTTTCGTGGCTGACAGTTTGATGTGCACCCTTCCAGACCTCTCTCCCTATGCTTACTATCGTGTATGTTTGTAGAAATAACCAGGTTGTTTGTGCTGTAGTTTCTAACCTGCTTTGTTTCTTATTAATGGGAACACGACTGGTTCTGCAACATTTTTCCCCTTTGTTTGGTTGGTTTATGTGCACTCAACAGTAAATCTCCAAGAATTTTCTCTGTTCCCCTCACTATACACATGGCAGGCAAGACTCTTCCACCCTGATACAAAAGGCCCCACCCAGAGAAGGCCAGCCCGACGCCCTGACCCCATGAGGGATTCTCCCTGTCTCACTAATGCACCGTCTCCCATGCCCTGCAG
Seq C2 exon
GGGGAGCTAGAGCGTCAGCTTCTTCAAGCCAACCCCATCCTAGAAGCCTTTGGCAATGCCAAGACGGTGAAGAACGACAACTCTTCCCGATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030739-Myh14:NM_028021:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=NA C2=0.032
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.9=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.3=100)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: