RnoINT0096418 @ rn6
Intron Retention
Gene
ENSRNOG00000020014 | Myh14
Description
myosin heavy chain 14 [Source:RGD Symbol;Acc:1306821]
Coordinates
chr1:100656697-100657339:-
Coord C1 exon
chr1:100657237-100657339
Coord A exon
chr1:100656721-100657236
Coord C2 exon
chr1:100656697-100656720
Length
516 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGC
5' ss Score
3.69
3' ss Seq
GTGTCCTGTGACTTCCTCAGGCC
3' ss Score
8.97
Exon sequences
Seq C1 exon
GGGAGAGTCTGGAGCTGGGAAGACGGAGAACACCAAGAAGGTCATCCAGTACCTGGCCCATGTGGCATCATCTCCAAAGGGCAGGAAGGAACCTGGTGTCCCT
Seq A exon
GTAAGCCACAGAGCCTCGGCCCACTCCAGACTTGTCACCAGCAGCATCTTTTATCTTGGGCTGCACTCCACATTCACAGTTGGTGCAGGGGCCTATGTCTCCCTGTGCTAGCTGGGACCTCCTGTGTGCTCGTCCTGAAGGCAGGAGTGAGCAGGCTGGCGATGTGAGGCTGGCTCTTAGCCCTGTCGGTTGGAGGGCAGTGCTTGGCACATCGCACATGCTTCATTCTGAGGCCTGGTGTGTCTAGGTTTGGAGGGCAGTAGAGGTAACCCCTGTAGTCTCAGGGAGTGGTTACCCCAACAACATTCACAGGAAGCCCCAGCCATGGTGGGTGAGTCCTGACGGGGGTGGGGGCAGAGGGAGGTGGTACAGTGAGATTTAAGCCTGGTGCGTAATCCCCGAGGTCCTAGCCCCTCAGCCCCAGCTCTGCCCTGAGGCCTCCAGTTCACCTACATGTCTGTCCATGTTCCATGTGCCGTGTCCTGGTTCGTGTGTCGTGTCCTGTGACTTCCTCAG
Seq C2 exon
GCCTCCGTCAGCACCATGTCTTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020014:ENSRNOT00000027132:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.257 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(14.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(1.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]