GgaINT0015051 @ galGal3
Intron Retention
Gene
ENSGALG00000006520 | MYH11_CHICK
Description
NA
Coordinates
chr14:7652014-7654138:-
Coord C1 exon
chr14:7654118-7654138
Coord A exon
chr14:7652107-7654117
Coord C2 exon
chr14:7652014-7652106
Length
2011 bp
Sequences
Splice sites
5' ss Seq
TACGTGAGT
5' ss Score
7.77
3' ss Seq
TGAGTCTGAATGAATTTTAGGGT
3' ss Score
6.76
Exon sequences
Seq C1 exon
CAAGGTCCATCTTTTTCTTAC
Seq A exon
GTGAGTAACTTAGACTGTTTGATGTGTGTTTAAGGCACTGAGTGTAGATCTGCATGCTATTGTTGCACCTCAAAAAATTTAAGAGAGACTTTGTTGGAATATGTTGTATGATATGATGAAAAGCAACAATAGCGCCAAATGCTCTCACAAATCAACCCTAACTGTGTCAGGCTCCATGGTGAAGAATGAGGTCTGACACAGGCAGGGTCATCTCTCAAATATCACTCTCTTCTATACGTGTGTGTTTAAATTGCCATAGTTTGAATGAAATTTCCCACGATCCTGAAAGAGTCACTCAGCCTGAAATTGAGCAATGTGATTTCTGAATGAAAATATCTAAATGTTTTCCATACTTCAGGTTGAACTTTCTAGGACTGTTGTGAAATAATTCCTAAAACTCACAGTGTTGATTGATTTGTTTGGCTGCATGCTTTGCATTTGATATTGCTTTCAGTTTTACATTTTCATGTAACTGTTGAGGACTGTTCACATCTGCAAGGGTTAGCATGCTCCTAGCTTGCTGCTGTAATGTGTAACAGAGCAGTTCCCACTGCAGCGTGTGTCTGCAGGTATGTTATGGCAGTTTGTAACAGACCCTCGTGGGCCCTCCTGCATTGTGATGTGCCATCCAGCATATCAGTACTTTGGGAATGTAGGCAGGTTTGCTGGCATATACTGTTCGTTTGTATGCCAGGTACTTCTTTGTATTACCCTTTTTCCCTCATTCTGATTGCTGGTTCTCAGACTTCAGCTACAACAAAGTGTTGCCCCTTAATTTTATTTATTACTTCATCTGACAAGCTCTCTGAAAAAAAACTAAATTCATTGCTGGTCCAAACAACTCCATGGAGTTCAGTGGACTTTCTTCATGCCTTAGCTCTCCAAACATCTGTAATCTTAGGAAAGTCCTCATTCTTCTGTCATCTGACCATGTAGATAAGTTTAGCCATTTGTTAAGAAACTCTTGTTTTTTTATTATATTTTTGAGGTAACTCTCATCATTCCCATATAAATTACAAGAAATCCAGAAACAGCATTTAGGAGGTTACAAGTTTTGCACCCTAATTGGGAAGAACTGTCACCTTCCAAATTATTGCCTCTGGATTCAACTTACCTGGATATCAACGTATCATATTATCTGTCATGGACTTTTTTTCTGCTGTTATTCAGCACGAGTTATTTAAAATGGGGCATGCTACTGTAAAGTAGTCCACAAATAGGAGGAGAAGCAAATGTGAAAGTAACTTCATAGCACAGAGCTAAATGAAAAGTAAAAAAAAAACTGTCAAACTATCCTAATAAGCAAAGACTTTTTTCAGCTTCATTGGTTTCTTTAGAAATAGGAGTATTAAATGCATGCTCATTTCATTGCATGATGTGTTTCCACTAGCAATTATCAAGCACAATTAACAACATAATAAAAGGTTTGTGTGTTTGCATGAGAATTCATTATCTTAGTTTGAAATAAATTGATGCACTTCCATTTTTAACCTAAATAGCCTTGCATGGATCATTATTAATAGACTTGGTGAAATCTGCTTTGTAGCTTTGTGCTGCATTACATTAAAATGATTCTCGGCAAGTTATTCTAATTACATCGTCATTTGCTAGCAAAGGATCTCGATAAACTAACTTGAAAAAGATATGCTAGAGGTTCCTTTAAGAAAATCTCTTTTAAAATGACATTAAACTGAATACATATATATATAATTTGTCATTGAATGACCCTCTTATTAAGAAAGACCAGTCATGATGCTAAACAGATTAATAGACTTTGCCGCAGGCAACAGGGCTGGAAAAGGGTCATGTATACAGGACATCAGTTGACTGCACAAATATATAAACACAAAGATTAATAGGGAATGAAAACAAATCCACAAGCAGTGCAGTCTTCAACAAAAAAGTGAGAGGCTTAAATTATCTTTCTCCACATTTTTCTCCAGTGTACATGTACTATTTTTAATTAACTAATTATGAAGTTCAGGGTTAACTGAGTCTGAATGAATTTTAG
Seq C2 exon
GGTGAGCTGGAAAAACAGCTTCTACAGGCAAATCCTATTCTTGAAGCTTTTGGAAATGCCAAAACTGTGAAGAATGACAACTCCTCCAGATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006520:ENSGALT00000033605:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.429 A=NA C2=0.014
Domain overlap (PFAM):
C1:
PF0273614=Myosin_N=PD(0.1=0.0),PF0006316=Myosin_head=FE(9.5=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]