DreINT0099819 @ danRer10
Intron Retention
Gene
ENSDARG00000100972 | myh11b
Description
myosin, heavy chain 11b, smooth muscle [Source:ZFIN;Acc:ZDB-GENE-101124-2]
Coordinates
chr3:36560334-36561738:-
Coord C1 exon
chr3:36561656-36561738
Coord A exon
chr3:36560427-36561655
Coord C2 exon
chr3:36560334-36560426
Length
1229 bp
Sequences
Splice sites
5' ss Seq
TCTGTGAGT
5' ss Score
7
3' ss Seq
GATTGAATTAATTGATTCAGGGA
3' ss Score
3.44
Exon sequences
Seq C1 exon
GCAAAACTGAAAATACCAAAAAAGTCATCCAGTACCTGGCGGTTGTGGCATCATCACATAAAGGAAAGAAAGAGGCCACTTCT
Seq A exon
GTGAGTCCGTCTGTTTGATATATAATACCCCATCCAGTACAGTGAGATGGGTTCTGCATGTCCTTGATTACTGTTTAGATTTTAATAACAGTGCAGTGTTTGATTAATACAAATGTCACATCTTTGATGTAGGATACAAGCTCTTCAGCACCAAACAAGGTATGTTTGAATGTTACATGGCAAAGTACTTTAATCCTGTAGTACATAAGCTTTTGCATGTGTTTTTGAATTTTGGTGGCTGTAAATATAGAAAACAAAATGCAACTGATGCATTCTCAGCAATAATGTGCAGGATATGCAGATCTGAAGACATTAAAGACACTATCATTTCTAAACATTTTAAACTTAAGTCATTCTCAATTTTTTCCATTTATTTGTTTCTAAATTTCTTCTTTTGGCTTTGTTTAGCAACAAAAAGGATCCCAGCTAGCATTTGTGAGTATATATGAAGCATCATGCATGACCAAGACATTTTCTTTTCTTTAGTGTGTCTAAGATGTATAATGCAGCATGCTTTCTTAATTAAATAAGATTTTAAAACTAAATTTTTAGAGAATAATTACAATCAATATTTTTTGCTACTATCCTTCAAGACTCGACATTTCATTTTTACAGGAATATACATTTAACTGAATAATTGCATTATTATTTACCAATATTTTACATTATTCATATTATATTATACAATTTATCAATTAATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTGTGTTATATTATATTATATTGTGTTATGTTATATTATATTATATTGTTTTATGTTATATTATATTATATTATATTATTTTATATTGTGTTATATTATATTATATTGTGTTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTGTGTTATGTTATATTATATTATTTTATGTTATATTATATTATATTGTTTTATGTTATATTATATTATATTATTTTATATTGTGTTATGTTATATTATATTAAATGATATTATATTGTGTTATGTTATATTATGTTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTACACTTCATTGAATGGTTGATTGAATTAATTGATTCAG
Seq C2 exon
GGAGAGCTTGAGAAGCAGCTCCTGCAGGCCAATCCCATTCTGGAGGCATTTGGAAATGCAAAGACCATCAAAAATGATAATTCTTCAAGATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100972:ENSDART00000166896:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.0=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]