HsaINT0107534 @ hg38
Intron Retention
Gene
ENSG00000133392 | MYH11
Description
myosin heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:7569]
Coordinates
chr16:15782385-15786732:-
Coord C1 exon
chr16:15786630-15786732
Coord A exon
chr16:15782478-15786629
Coord C2 exon
chr16:15782385-15782477
Length
4152 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
TAGATGTGAATGAATTTTAGGGA
3' ss Score
3.88
Exon sequences
Seq C1 exon
AGGCGAGTCTGGAGCCGGGAAAACCGAAAACACCAAGAAGGTCATTCAGTACCTGGCCGTGGTGGCCTCCTCCCACAAGGGCAAGAAAGACACAAGTATCACG
Seq A exon
GTGAGTGGCAGTTCCCAATCAGAGGCCATGATTTAGCCAACCGGTCTCCAGCTTGCAGCCCAACCGAGATACAAACAGAACATCATTGCAAGAACTCAGGCCCCATCTGACTACCCCTCCCCTGAAGACTCAAAGAGGGACCGTCTTTTTGGCGAGCAGGCCTGTTGAGTGTGGGTGATTTCTTGGCTCAGCTAGAAGCATCCCTCCAGAAGGGGGCCCGTTTTGTGAAATGAGAATAAGCCCTTTCCTTCCATAGCGAGATCTTCCTCCACGTCGGGGCTTCTCAGTGGTGGCACTGATGTCATTTTGGACCAGATAACTCTTCCTTGGAGGGGCTTCCCTGTGGCTCGTAGAATGTTTCACAACATCCCTGGCCTCGACCCGCCAGATGCCGACAGCCCCCTTCCCTCCAGTTGTGACAACCAAAAATATCTCTAGACATTGTCAGATGTTCCCTGGGGTGGGACAGTTGCCCTTGATTGAGAAGCACTCCTTTCATGAATCTCTGTAACGTCCCAGGGGTTAAGGTACCTTTTGGGTTCCCGGATTCCTCCACGTGTCCCCCTGTCCCTGGGATGGAGATGCTGGTATCACTCGGCCCGTGGGCTTCAGTGCAATGCCATTCAGTAACTGTGGATTGAGCACCTACTGTATGCCAGGAACCACTTGGGGTGGGGACCTGGGGATAAGTCTGAGAGATGCTGTTATTCTCTTCTCTGAGCTTCCAGACCTGTGGAAGAGCATGTAGTTGTCAAAGAATCCCTCAAATAAACAGATGATGACACGGTATGACTAAGAGCTTGGGAGGAAAAGAAGAGCAGGTTTCTAGAGTCATCACCTCTAGGGCCCATCCTTCTCTTCCTCCTCGTGTGTCAGCCCTGCCCCATCTATCCCACAGGAGGGGGCACGTGGTAGGGCCGCTAGGACTGGCCGGTGCCTCCGTCTGCAGGTTTGTGGGTGGGAAGATGGTAGGATGGAGATCTGACCACGGCATGGGGTGTCTCCAGTGTTCGCCATTCCAGATGTCACTTTGCGTCCTCAGAGGGGACTCTGGGGCAGCCACCATGGCCGGCTTGTCTGGAGGCCCTTGGAGATCTAGGATGGGCGCTGGTCGTGGCTTTGGAGAACTTTCCTTCTCCAAACAAATGCAGGAAACTCAAGATTCAGCATCCTAGAATTGTCTCTGGCAAGTTGGTTTCCAGCCATAGTGAGTGGGAACAATGGCCCCAGAGGCTGTGTGGCAGTTTAAACACAGTTTCCACTGCCTTCCCTTTCCCTAAAGAGTAAACACAGGAGATAATACTTTCTAACAACTCATCGTTATCAAGGGCCTACTATGTGCTGCTTGTTTTGGCTGCATGCGTAAACACATCTCAGACATTGTCTCACTGGATACTGTTTTAAGGAGCCTAATGTGGCCCCAGTAATTATGAAAACCTTTGAAATGTCTGGATCTCTAAGAAATTAGAAAAAGGAGGGAATGGCTGAGCATGGGGGCTCATGCCTGTAATCTGTGTTTTGGGAGGCCAAGGTGGGAGGATGGTCTGAGCCCAGGAGTTCAGGACCAGCCTGGGTGACATAGTGAGACCCTGTCTGTACCAAAAAAAAAAAAAAAAAAAAATCAAGAGAATTAGCTGGGCCTGGTGTGCATGCCTGTAGTCTTAGCTACTTGGGAGGCTGAGGCAGGAGGATTGCCTGAGCCCAGTAGGTTGAGACTGCAGTGAGCTGTGATCGTATTCCTGCAGCTAAACAGAGAGAAAAGAAACAGTATCAAGGAAAAGGAGCTGACCAGTCTGTCTGGGAGACTCCAGGCTGTTTGGGGGGATCAAAGTCATATATTCTCCAGCCCCTGATGTCCATGTGATGGAAATAACGCTGACATTTGTTTTATACTGTGTTGTTCAACCACAGCAAGGCCCATCTTTTGCCTACGTGAGTAACTGAGAGTGTTTTCCTGGTGTGTAGGGGAGGCACGGAGTGAACTTAGATCTGCATGATCCTCTTGCACCCACCGAGTCCCGTAGCTGGTGGTAGAAATGGGGTAGGCCCTAGAGTTTCACAACTTAAATCAGTAAATGCACCAAAATACCATCCTGTGGGTGTCTGATGCCAGGGAAGGGTGTGGGGGTGCATTTACCACCCACGGGACGCCTATTGGAGTCCCCAGGGTTGCGCTCCAGCCTGAAATGGATTTCTCCGGTTCAGAATGAACCCCTGCACCCTTCAAAGCATCCGCTCCTGGTACCCTTGACTGGAACAACCTAGACAGAGATGTCTGTCCCATCTGGCTGAGTGTTTTAGGACTGTCAGGCCCCAAAGCTTCCCTGGCTCGATGGACAGTCGATGGCACAGCTGTGGCATGCCTCCCTCTTCTCTCCCTGCCATCATCCCTAAGTGTCTTCCCTCAGCCCTGTCCCTGGTGCACCAGTGTGTCCCTGTGCATGCGTGTGCAGTGCGTGTCTGTCTCTTGCATGCTGGTTGCTTGACTCAAGCCTCCAGAAACAGTCTTGGAGGTCGCGATGCACTAGCTTTGGTGGCGCGGTAAGGCCCCAGCTACGCAACGCATAACCTGGTCCTGCTTGGACCTGTGCATATGTAAACTCATCTCTAACACAGAGCTTGGGGGGCTGATGTGTGGGTCCCAGCCTAGAAGAAACCCACAGGTGTCTTCCTTGGCTCCCGAAAAGATCATTCAATCCATCTTAGTTAGACCCTGGGTGACTGTGTTGCAGATCAGAAGGAGAATTACAGTTCTTATTTGGGATCTGCTTTTGTGTGACCTTGGCCGAGTCAGTTAACTCCTCGGGGCTATGGTTTCATCATCTATAAAATTGAGGGTTTGAACCAGGTCCCCCGATTTAAAGCTCTCTTGCCAAGACTTTTCAACCTTACCTGCCAGAATCCCCATTCTAGAAAGGGAGCCTTTTTCAGAGAGCATGGAGACCCCAAGTTTATGTGAACAAAAGTGATTCCTTTAGTCGTCTTCCCACCAACAAAGAAATGCCCGTGGTGCTCCTTGTAAATTTCCACCAGTCTCAGCTGTGGTGATTCCACTTGTAGCTGAGATTTGTATGCGGATGAGGCTTTTGCTTCATCTTTCTCTGGGAGCTACAAAAAGGAGGATGTGTGGACAAATCAAAACAGAAACAAATAGCAGCTTCCTGCTTTGTCCTGTAGACCAGGTACCCTGATGCCTTCCTAGCATGCGGAGGAATGAGGAGGAAGCCATGCCCATCCTTGTCCCCTCTAGACACTTTCCCGGCTCCTGTCCAGCCCAGCCCTGATGCCTGGAAAAATAAGGAAGGGAAAGCAGGAGGGGAGGACAAGGAGAAAAACTCCCAGAATCCAGGGCCTGGAGGCCTCGGGGCCCAACTGCAGCCGCCATGTTTTAGGGCTAGGCCAAGAGCAGCTCGTTTGCTTTCCCAGCTTAACTTACCACATTGGCCCTTTCCTGCCATGATTAATCACGTGACCGCGTTTGTGCAAAGGCATCCCGGCAGAGGGGGCCGGTGGGCTGTGTACAGTCTCAGCTTCCTTTAACCCAATGAATGGAGCTCAGGCAACCTGCTTTGAAGCTTTATTCCGCAGTCCGCTAAGAGGATTCCTGGTGGGTTTTGTGCATTCCTTACTTGTCTGCTGTAGAAGACTTCAGAAAACCAGTCCTGAGAAAGAAAAAATTGCAACTTAAAAAAAATTGCACTAAAATAATTAGAAGGAGGCTTGTAGTGGTTTAACTTGAAGAAGGCTGCTTGTTAAACATGAACAGCAGCACGACTGCCATGTACAGTGGGACAGGTGGTGCACTGCACAACTCCGGGGGGCACCATTCATCATGATGTAAATGACATCACCGACATTGTGCAAGGCAGTGGCTTTGAGTGGCAGTGATGTTGCACAGATGAGCAGGCCCTGGTCTTGAAAAAAGTGACCTTCCTAGGGAGCAGATGTCCTAGCTATTAGAGAGCTCAGACAGTTGCTTCTCTTCTGAAATCCTCCTGTAAATCTGAACATTAGCATCAGGGTCTAAGAGGAGGTAGGAGATAGGAGAGAACCTGTGGGTTAAGGGCAGAGTTTTGTGACAACATCCATCCAAGGTAGAACTGTCAGGACCTAGGTTGCTTTCTCCAATAACTAGATGTGAATGAATTTTAG
Seq C2 exon
GGAGAGCTGGAAAAGCAGCTTCTACAAGCAAACCCGATTCTGGAGGCTTTCGGCAACGCCAAAACAGTGAAGAACGACAACTCCTCACGATTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133392:ENST00000300036:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.163 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.0=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.4=100)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development