MmuINT0103290 @ mm9
Intron Retention
Gene
ENSMUSG00000018830 | Myh11
Description
myosin, heavy polypeptide 11, smooth muscle [Source:MGI Symbol;Acc:MGI:102643]
Coordinates
chr16:14246820-14250717:-
Coord C1 exon
chr16:14250615-14250717
Coord A exon
chr16:14246913-14250614
Coord C2 exon
chr16:14246820-14246912
Length
3702 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
3' ss Seq
TAGCTATGAATGAATTTTAGGGG
3' ss Score
3.89
Exon sequences
Seq C1 exon
AGGTGAGTCTGGAGCCGGAAAGACAGAGAACACAAAGAAAGTCATACAGTACTTGGCTGTGGTGGCATCCTCCCACAAGGGCAAGAAAGACAGCAGCATCACG
Seq A exon
GTAAGTGGCAGCGCTGTCACCAAGGCCACCCAGGCCTTAGCATCCTCAGAGCGAACAGAACCCTGAGTGAGAACTCATCCTGTGTTCGCTGGGTTGTCCCCCCTGGGTGGAGTGGGCTGACTCTGGAGACCCTCTCCCCCTTCATGGATACAGGGTCTGAGAAGTCTGCAGACAGCCTCCTCCACTGAGATCTGCGGTGAGCACTTCTTAGCAGTGGCTCTGACATCACTATGACCTGACTTTCTGTTGTAGGGACTGTTCTATGAACTGCAATGCTCCTGGTCCCTTGTCTCTGTCCCTGTATGCCACAATATATTTGGAGGCAGCAAATATGCTCCAGATACTGTCAAATGTTCCTAGGGGGTGGGACTCAGTCCCAAATTGGAATGACCCCATGTCCTACCCCCAGGGGACAAGGATGCTGAGGTCACTCAGCATGGGTCCCTGGTCTACTATTGACTGACCTTCTTGCTGTGAGCCAGACAACACAAGGATGAGGTCCTACAGCAACATGTGGTTACATTGTTAGACCTGCTAGTACAAACAAATGACAGACACAGGAGGACAACAGCAACCAAAAATGCCACTGTCCCCGTGGGAGGAGGACTTACAAGAAAAAGTACAAGAAGTTTCTAGAACCTTCTCTTATTTCCTTTCCTCTCTCTCATTTGCCTTCCTCATCAGTCCACTATGGGACCAAGGATCCTGTCAGTTCCTCTCTATGGATTCTGAGGGCAGAGAGATGACAGGAAAGGTTTCTGCCACCCTGCATCTTGTTTCCTATCCTTAGGGGTAGCAGTCTTGCTCAGTGGCCAGTGAACCTGGAGTTCTCAGGGACCTGGGCTGGGTGCTGGATATATCCTAGGAAACTTTTCCCCTTAAACAAGCCCACAACCATAGACCAGCCTGTCAGGGTTGTGTAGGGACCACTGGCCTAAGCTTGTTTATCAGAGAGAATCCTGCTTCTTCCCACCTAGCCTTTTCCTATATAGAAAAAAACAAGATGTGATAGTTACGATGATTCAGCTAGACACTCTCTCCCTCTATATGCAGGCATATTGCTTCCCCTATCAGATCAAACGTCAGTGTGGTGGGGGAGGAGAGCTCGAGGGGTTGGAAGAATGCCTACCTAGTGGGTACAAAGCCTTGTGCTCATCCCCAGAATCCTATAAACCAGATGTGGTAGTGCACACCTTTAATCCAAACATTTGGGAGGTAAAGGCAGGAGAATTATAACTTCAACCTTGGGTATCTAGTAAGTTTGAGACCAGTCTGGGATACATAAGACCCTGTCAAAAGGAGAAAGGAAGGGCAGGAAGAAGGAAGGGAGGGAGGGAGAGAGGAGAGGAAGGAAAGGAGGGAGGGGGAAAGGAGGGAGCCAGGGAGGGAGGGAGGGAGGAGAGGAAGGAAAGGAGGGAGGGGGAAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAGAGGAAGGAAAGGAGGGAGGAGAGGAAGGAAAGGAGGGAGGGGAAAAAGAGGGAGCCAGGGAGGGAGGGAGGGAGGGAGGAAGATATACACTAAGGCCCTAGCAATTAGGAAACGTGAGGTAGCTGGGTGTCTAAGAATGTAGTTAATGGCCAATTGTGATGGTGTGAGCCTGTGATCCCAGCACTCAGGGGCTAAGGCAGGAGGATCATGAGTTCAAAGCTAGCTTGGCTATACAGTGTCTTCAAAAGGAAGTAAGGGAGTGAGGGAGGGTGCATGGAGAGAAAAAAGAGAGGAGAGTCTAGAGAGAGCAGCAGAGTATAAGGGAAGGAGCCGATCACTGTGGGCTGGGACTGGTAGCCATGACATGGAGAAGGAGCCTAGCCCAGGGCTCCCAATATGGGGTGGGCCTTGGATGTGAAGCAGAAGCACTGACCTCTGTTTCATACTGTGCTATCCCACCGCAGCAAGGTCCATCTTTTGCCTACGTGAGTAACAGAGTTTTCCTGGTGTGACGGGAGGCACCGAGTGGATTAAGACCTGCATGCATCTTTTGCACCCACGGGCTCCTAGTAGATGTGGGAACAGGGCAGACTCATGAGTTCCTGGCCCCAGACTAGTAGAGGCACCAAAATATCATGGTGTACATGGGTGGGAGGTGGGGGTGATACCAGAGTGGGGCATGTTAGCTATCTAGTGGCTTCTACCAGAATCCCTAGGGCTGTACTCCAGCCTGGATGGATTGCCCCAGTTCAGAATAAACTCCCTCATCACTCCCCATAGTGTGCCCACCATCAGTACCTCCAACACATTGGAATGACCCATCCCATCTGTTGAGCATCTTAGGACCATCAGGCTCCAGAGTGGCCCTGGCTTGGTCAGTAGGAAACCCAGCCAGGGCAAAGTTACCATCCGTGACTTCCTGCCCCAGCTCTGTCCCCTGCACCCGTGTGTCTCTGTGCATGTGTGTGTTGTGCTTGTGTCTCCTCCTGCATGCCAGTTGCCTCACCTGAGACATTTGAGACCTTCTTGGGTTTGTGATGCACTAGCTTTGGTGGCTTGGTAAGGCCCCGGCTACGGCACACACAGCCTGCCCTGCATGGATCTCTGTGTGTGTCAACTGAACTCTGATGCAGAGCTGGCACATGGGTCCCAGCCTAAAAGAGACCCTCCAGAGTGTTCTGTGTCACCTAGTCTGCTGTAGGTAGATGCTGGGCCACAATACTTTATCTCATACAAGAAGCAGGATCTTACTTGGCATGGGCTGTGTAACCTTTGCCCAGACACTTAACAGTTCTGGGCCACAGTCTCATCATGCATCAGATGAGGTCTCTATGTTCAAAATGCTGCTCAGAAGACCATTTAATGTGCCTGCTAGAAGACTCACTCTAGAAGAGGGAGCTTGGGAACAAAGGGTCAGAGGACACCTTTGGATCCCAAGTCTACACAGGTAGATGTCATTACTCTAAGTTTCTTCCTACTAAGCCAAGGAAAGTGGATGCCTCTTCTTGTCAATTTCTCCAGTGGGCCAGGGCTGGAGTTTCCATGAAGACAAGGCCTTCTGCATCTTAATTTACATGCTGCATTGCAGGGGGATGCTCAGGCCAACAGTAGTTGCTGCCTTCTGTAGCTTGGCATCTCTTTGCTTTCCTGGCATGGCTTACTTTGTTGGCCCTTTCTATGTCACTATTAAACACGTGGTTGCATTTGCACACAGGGGCCCTTCAGAGGGGTCTGACGGGCTGCATTTCATCTGCTAGACAGAGCTCATGAAGTTTCAAGGTTTCATTCTGCAGCTGCTTAAAAGAATCTCTGATGGGTTTGGAGCCTCCAAATTACCTTCCTTAGGAAGTATCAGAAGTCCAGATTGGCCCATGAAATGCTGCAAGTTTCATAAAAATTATGCTTAAGCAGTTGGGAGGGTTGTAATGGCTTAGCTTGAGGAAAGTGACACATCAAACTTGCACTGCGGTATCACCATGGACAGCAGGACTCCTGTACACTGCATACTCCCAGAGGCATCCCAGCGTTGTACTACGCAATGACCTTTGTCTCTGGAAAGCAATCTTTCAAAGGAGTGGATGTCTTCTCTGTCAGAAAGCTCTTCTGAACAGATCTCGTACATCTGGATGTGACTGTTAGGGTCTTGGGGGGGCTGAGGACAGGAAAGAATCTGTGGCTGAAGGGCAGAATCTTGTGTCAGGCCTTGTGCTATGCCCCCCCATAACTAGCTATGAATGAATTTTAG
Seq C2 exon
GGGGAGCTGGAAAAGCAGCTTCTACAGGCAAACCCAATCCTGGAGGCTTTCGGCAATGCGAAAACCGTCAAGAACGACAACTCCTCTCGCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018830-Myh11:NM_013607:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.114 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.0=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.4=100)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: