HsaINT0107540 @ hg19
Intron Retention
Gene
ENSG00000133392 | MYH11
Description
myosin, heavy chain 11, smooth muscle [Source:HGNC Symbol;Acc:7569]
Coordinates
chr16:15876242-15880589:-
Coord C1 exon
chr16:15880487-15880589
Coord A exon
chr16:15876335-15880486
Coord C2 exon
chr16:15876242-15876334
Length
4152 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
TAGATGTGAATGAATTTTAGGGA
3' ss Score
3.88
Exon sequences
Seq C1 exon
AGGCGAGTCTGGAGCCGGGAAAACCGAAAACACCAAGAAGGTCATTCAGTACCTGGCCGTGGTGGCCTCCTCCCACAAGGGCAAGAAAGACACAAGTATCACG
Seq A exon
GTGAGTGGCAGTTCCCAATCAGAGGCCATGATTTAGCCAACCGGTCTCCAGCTTGCAGCCCAACCGAGATACAAACAGAACATCATTGCAAGAACTCAGGCCCCATCTGACTACCCCTCCCCTGAAGACTCAAAGAGGGACCGTCTTTTTGGCGAGCAGGCCTGTTGAGTGTGGGTGATTTCTTGGCTCAGCTAGAAGCATCCCTCCAGAAGGGGGCCCGTTTTGTGAAATGAGAATAAGCCCTTTCCTTCCATAGCGAGATCTTCCTCCACGTCGGGGCTTCTCAGTGGTGGCACTGATGTCATTTTGGACCAGATAACTCTTCCTTGGAGGGGCTTCCCTGTGGCTCGTAGAATGTTTCACAACATCCCTGGCCTCGACCCGCCAGATGCCGACAGCCCCCTTCCCTCCAGTTGTGACAACCAAAAATATCTCTAGACATTGTCAGATGTTCCCTGGGGTGGGACAGTTGCCCTTGATTGAGAAGCACTCCTTTCATGAATCTCTGTAACGTCCCAGGGGTTAAGGTACCTTTTGGGTTCCCGGATTCCTCCACGTGTCCCCCTGTCCCTGGGATGGAGATGCTGGTATCACTCGGCCCGTGGGCTTCAGTGCAATGCCATTCAGTAACTGTGGATTGAGCACCTACTGTATGCCAGGAACCACTTGGGGTGGGGACCTGGGGATAAGTCTGAGAGATGCTGTTATTCTCTTCTCTGAGCTTCCAGACCTGTGGAAGAGCATGTAGTTGTCAAAGAATCCCTCAAATAAACAGATGATGACACGGTATGACTAAGAGCTTGGGAGGAAAAGAAGAGCAGGTTTCTAGAGTCATCACCTCTAGGGCCCATCCTTCTCTTCCTCCTCGTGTGTCAGCCCTGCCCCATCTATCCCACAGGAGGGGGCACGTGGTAGGGCCGCTAGGACTGGCCGGTGCCTCCGTCTGCAGGTTTGTGGGTGGGAAGATGGTAGGATGGAGATCTGACCACGGCATGGGGTGTCTCCAGTGTTCGCCATTCCAGATGTCACTTTGCGTCCTCAGAGGGGACTCTGGGGCAGCCACCATGGCCGGCTTGTCTGGAGGCCCTTGGAGATCTAGGATGGGCGCTGGTCGTGGCTTTGGAGAACTTTCCTTCTCCAAACAAATGCAGGAAACTCAAGATTCAGCATCCTAGAATTGTCTCTGGCAAGTTGGTTTCCAGCCATAGTGAGTGGGAACAATGGCCCCAGAGGCTGTGTGGCAGTTTAAACACAGTTTCCACTGCCTTCCCTTTCCCTAAAGAGTAAACACAGGAGATAATACTTTCTAACAACTCATCGTTATCAAGGGCCTACTATGTGCTGCTTGTTTTGGCTGCATGCGTAAACACATCTCAGACATTGTCTCACTGGATACTGTTTTAAGGAGCCTAATGTGGCCCCAGTAATTATGAAAACCTTTGAAATGTCTGGATCTCTAAGAAATTAGAAAAAGGAGGGAATGGCTGAGCATGGGGGCTCATGCCTGTAATCTGTGTTTTGGGAGGCCAAGGTGGGAGGATGGTCTGAGCCCAGGAGTTCAGGACCAGCCTGGGTGACATAGTGAGACCCTGTCTGTACCAAAAAAAAAAAAAAAAAAAAATCAAGAGAATTAGCTGGGCCTGGTGTGCATGCCTGTAGTCTTAGCTACTTGGGAGGCTGAGGCAGGAGGATTGCCTGAGCCCAGTAGGTTGAGACTGCAGTGAGCTGTGATCGTATTCCTGCAGCTAAACAGAGAGAAAAGAAACAGTATCAAGGAAAAGGAGCTGACCAGTCTGTCTGGGAGACTCCAGGCTGTTTGGGGGGATCAAAGTCATATATTCTCCAGCCCCTGATGTCCATGTGATGGAAATAACGCTGACATTTGTTTTATACTGTGTTGTTCAACCACAGCAAGGCCCATCTTTTGCCTACGTGAGTAACTGAGAGTGTTTTCCTGGTGTGTAGGGGAGGCACGGAGTGAACTTAGATCTGCATGATCCTCTTGCACCCACCGAGTCCCGTAGCTGGTGGTAGAAATGGGGTAGGCCCTAGAGTTTCACAACTTAAATCAGTAAATGCACCAAAATACCATCCTGTGGGTGTCTGATGCCAGGGAAGGGTGTGGGGGTGCATTTACCACCCACGGGACGCCTATTGGAGTCCCCAGGGTTGCGCTCCAGCCTGAAATGGATTTCTCCGGTTCAGAATGAACCCCTGCACCCTTCAAAGCATCCGCTCCTGGTACCCTTGACTGGAACAACCTAGACAGAGATGTCTGTCCCATCTGGCTGAGTGTTTTAGGACTGTCAGGCCCCAAAGCTTCCCTGGCTCGATGGACAGTCGATGGCACAGCTGTGGCATGCCTCCCTCTTCTCTCCCTGCCATCATCCCTAAGTGTCTTCCCTCAGCCCTGTCCCTGGTGCACCAGTGTGTCCCTGTGCATGCGTGTGCAGTGCGTGTCTGTCTCTTGCATGCTGGTTGCTTGACTCAAGCCTCCAGAAACAGTCTTGGAGGTCGCGATGCACTAGCTTTGGTGGCGCGGTAAGGCCCCAGCTACGCAACGCATAACCTGGTCCTGCTTGGACCTGTGCATATGTAAACTCATCTCTAACACAGAGCTTGGGGGGCTGATGTGTGGGTCCCAGCCTAGAAGAAACCCACAGGTGTCTTCCTTGGCTCCCGAAAAGATCATTCAATCCATCTTAGTTAGACCCTGGGTGACTGTGTTGCAGATCAGAAGGAGAATTACAGTTCTTATTTGGGATCTGCTTTTGTGTGACCTTGGCCGAGTCAGTTAACTCCTCGGGGCTATGGTTTCATCATCTATAAAATTGAGGGTTTGAACCAGGTCCCCCGATTTAAAGCTCTCTTGCCAAGACTTTTCAACCTTACCTGCCAGAATCCCCATTCTAGAAAGGGAGCCTTTTTCAGAGAGCATGGAGACCCCAAGTTTATGTGAACAAAAGTGATTCCTTTAGTCGTCTTCCCACCAACAAAGAAATGCCCGTGGTGCTCCTTGTAAATTTCCACCAGTCTCAGCTGTGGTGATTCCACTTGTAGCTGAGATTTGTATGCGGATGAGGCTTTTGCTTCATCTTTCTCTGGGAGCTACAAAAAGGAGGATGTGTGGACAAATCAAAACAGAAACAAATAGCAGCTTCCTGCTTTGTCCTGTAGACCAGGTACCCTGATGCCTTCCTAGCATGCGGAGGAATGAGGAGGAAGCCATGCCCATCCTTGTCCCCTCTAGACACTTTCCCGGCTCCTGTCCAGCCCAGCCCTGATGCCTGGAAAAATAAGGAAGGGAAAGCAGGAGGGGAGGACAAGGAGAAAAACTCCCAGAATCCAGGGCCTGGAGGCCTCGGGGCCCAACTGCAGCCGCCATGTTTTAGGGCTAGGCCAAGAGCAGCTCGTTTGCTTTCCCAGCTTAACTTACCACATTGGCCCTTTCCTGCCATGATTAATCACGTGACCGCGTTTGTGCAAAGGCATCCCGGCAGAGGGGGCCGGTGGGCTGTGTACAGTCTCAGCTTCCTTTAACCCAATGAATGGAGCTCAGGCAACCTGCTTTGAAGCTTTATTCCGCAGTCCGCTAAGAGGATTCCTGGTGGGTTTTGTGCATTCCTTACTTGTCTGCTGTAGAAGACTTCAGAAAACCAGTCCTGAGAAAGAAAAAATTGCAACTTAAAAAAAATTGCACTAAAATAATTAGAAGGAGGCTTGTAGTGGTTTAACTTGAAGAAGGCTGCTTGTTAAACATGAACAGCAGCACGACTGCCATGTACAGTGGGACAGGTGGTGCACTGCACAACTCCGGGGGGCACCATTCATCATGATGTAAATGACATCACCGACATTGTGCAAGGCAGTGGCTTTGAGTGGCAGTGATGTTGCACAGATGAGCAGGCCCTGGTCTTGAAAAAAGTGACCTTCCTAGGGAGCAGATGTCCTAGCTATTAGAGAGCTCAGACAGTTGCTTCTCTTCTGAAATCCTCCTGTAAATCTGAACATTAGCATCAGGGTCTAAGAGGAGGTAGGAGATAGGAGAGAACCTGTGGGTTAAGGGCAGAGTTTTGTGACAACATCCATCCAAGGTAGAACTGTCAGGACCTAGGTTGCTTTCTCCAATAACTAGATGTGAATGAATTTTAG
Seq C2 exon
GGAGAGCTGGAAAAGCAGCTTCTACAAGCAAACCCGATTCTGGAGGCTTTCGGCAACGCCAAAACAGTGAAGAACGACAACTCCTCACGATTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133392-MYH11:NM_002474:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.114 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.0=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.4=100)
Main Inclusion Isoform:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)