RnoINT0096377 @ rn6
Intron Retention
Gene
ENSRNOG00000057880 | Myh11
Description
myosin heavy chain 11 [Source:RGD Symbol;Acc:3136]
Coordinates
chr10:796668-800536:+
Coord C1 exon
chr10:796668-796770
Coord A exon
chr10:796771-800443
Coord C2 exon
chr10:800444-800536
Length
3673 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
3' ss Seq
TAGATATGAATGAATTTTAGGGG
3' ss Score
3.74
Exon sequences
Seq C1 exon
AGGTGAGTCTGGAGCTGGAAAGACAGAGAACACAAAGAAAGTCATACAGTATTTGGCTGTGGTGGCATCCTCCCACAAAGGCAAGAAAGACAGCAGCATCACG
Seq A exon
GTAAGTGACAAGCGCTGCCACCAAGGCCACCCAGGCTTCAGCATACTCAGAGTGAACAGAACCCTGAGTGAGAGAACTCATTCTGTTTTTGCTGGGTTGGTCCCTCTGGGTAAAGTGGGCTGACTCTGGGGACCCTCTCCCCCTGTCATAGATGCACAGTCTGAGAAGTCTGCAGACTTAGCCTCCTCCACTGGGATCTGCCATGTGCCAAAGTGGCTCTGTCGTAACTTTGACCCAATTTTCTGTACAGGGACTGTTCCATGAACTCCAGTGCTCTTGGACACTTGTCTCTGTTCCTATATGTCACAATATATTTGGAGCCAGCAAATATGCTCCAAATTCTGTTAAATGTTCCTAGGGGGTGGGACTCAGTCCCAAATTGGAATGACCCCCATGTCCCATCCCAAGGGGACAAGAGTGCTGAGGTCACTCAGCATGGGTCACTGATCCACTATTGGCTGACCTTCTTGCTGTGAGCCAGACACAAGGATGAGGTTCTACAGGGACATGTGGTTACATTATTATACCTGCTAGTACAAACAAAGGACAGGCACAATGAGAACAGCAACAAAAACATCCCACTGGCCCAGTGGGAGGAGGGTTTACAAGAAAAGTTCTAGAACCTTCTCTTGCTTCCCTTCCTCTCTCTCATTTGCCTTCCTCATCAGTCCTCTATGGGACCAAAGATCCTGTCAGTTCCACTCTATGGATGCTGAGGACAGGACATGATGAGAAAGGCTTCTGCCACCCTGCATCTTGTTTCCTGTCTTTAGGGATAGCAGACTTGCACAGTGGCCAGTAAACCTGGAGCTTTCAGGGACCTGGGGTGGGTGTTGGAAATAGCCTTAGAACCTGCTCCCCTTAAACAAACCCAAGACTATAGACCAGTCTGTCAGGGTTGTGTAGGGACCAATAGCCTAAGCTTGTATATATCAGAGAGAATCCTGCTTCTTCCTCACCTAGCCTGTTCCCATGTAGTGAAAATGACATAATAGTTACAATGATTCAGCTTTGTAAGGGCTGGACACTCTCTCCCTGAATATGCAGGCATATTTCTTTTCCCATAAGATTAGAGGTCAGTGTGGTGGGTGAGGGGAGATGGAGGGTTTGGTAGAATGCTTGCCTAGTGCTTGTCCCCAGCATCCCATAAACCAAATATAGTAGTGCACATCTATAGTCCAAACACTTGGGAAGTAAAGGCAGGAGAATTATAACTTTAAGTTCATCCTCAGGTATTTAGTAGGTCTGAGACCAGTCTGGGATATATAAGACCCTATCAAAAGAAGAAAGGAAGGGTGGAAGGGAGGGAGGGAGGGAGAGAGGAGAGGAAGGAGAGTAAGGAAAAAAGGGAGGGAGGAAGAAAATGAGGAAGCCAGGGAGGGAAGAAGGAAGGAAGGAAGGAAAGAAGGAAGGAAGGAAAGAAGAAAGGAAGGAAGGAAGGAAGGAAGACATTGAGTCCCTAGCAATAAGAAAGTATGAGGTATTTGGGTGTCTAAGAAAGTGGCTAATGGCCAGTTGTGATGGTGTAAACCTGTGAACCCAGCACTCAGGGTCTAAGGCTAGCCTGGCTACAGTGTCTCAAAAGGAAGTAAGAGAGTAAGGGAGGAGGGGTCATAGAAAGAAGAAAGAAGGAGAGTCTAGAGAGAACAGCAGAGTATAAGGGAAGGAGCTAATCAATCACTGTGGGCTGGAGCTAGTCACCATGGAATCGATGAGAAGGAGCCTAGCCCAGGGCTCCCACTATGGGGCGGGCCTTGGATGTGAAAGCAGAAGCACTGACCTCTGTTTCATACTGTGCTGTCCCACTGCAGCAAGGCCCATCTTTTGCCTACGTGAGTAACAGAGTTTTCCTGGTGTGACGGGAGGCACCGAGTGAATTAAGACCTGCATGCATCTTTTGCACCCACGGGTTCCTAGTAGATGTGGAAACAGGGCAGACTCATGAGTTCCTGGCCACAGACTAGTAGAGGCACCAAAATATCATGGTGTGCATGGGTGGGGGCTGGGGGTGATACCAGAGTGCAGAGTGGGGCGTGTTAGCTGTTCAGTGGCTTATGCAGAATCCCTGGAGCTGTACTCTAGTCTGGATAGATTGCTTTAGTTCAGTGTAAACTTCCTCACCACTTCCCACAGTACCCACCATCAGTACCCCTGTCCCATCTGTTGAGCATTGTAGGACCATCAGGCTCCAGAGTAGCCCTGGCTTGGTCAGTAAAGTTACCCTCCCTGGCTTCCTGCCCCAGCTCTGTCCCCTACACCCGTGTGTCTTTGTGCATGTGTGTGTTGTGCTTGTCTCTTCTCCTGCATGCCAGTTGCCTCACCTGAGATATTTGAAACTTTCTTGGGTTTGTGATGCACTAGCTTTGGCGGCTTGGTAAGGCCCCGGCTGTGCTACCCACAACCTACCCTGCATGGATCTCTGTGTATGTCAACTGAATTCTGACGCAGAGCTGGCACATGGATCCCAGCCTAAAAGAGACCCTCAAGAGTGTTCCATGTCACCTAGTCTGTTATAGGTAGATACTGGGCCACAGTACTTTGTCTCATACAAGAAGCAGGATGTTACTTGACATGAGCTGTGTAACCTTTGCCCAGTCACTTAATAGCTCTGGGCCACAGTCTCATTATGCATCAGATGACATCTCTATGTTCAAAAATCTCCCCAGAGAACTGTTTAATGTGCCCCACTAGAAGACCCTTTCTAGAAGAGGGAGATTAGAGACAGGGGGTAAGGGGACAACTTTGGATCCCATTACTCTAAGTTTCTTCCAACTAAGGTAAGGAAAGTGGATGCCTCTTTTTGTCAGTTTCCCCAGTGGACTAGGACTGGAGTTTCCATGAAGACAAGGTCTTCTGCATCTTAATTTGCAGGCTGCATTGCAGGGGGATGCCCAGGCCAGCAGTAGTTGCTGCCTTCTGTGGCTTGGCATCTCTTTGCTCTCCTGGCATGGCTTACTTTGTTGGCCCTTTCTATGTCACTATTAATCATGTTACTGCATTTGCACACAGGGGCCCTGTAGAGGGGCGTGATGGGCTGCACTCAGTCTCAGCTGCATTTAATCTGCTACGCAGCACTCATGAAGCTTTGAGGCTTCATTCTGCAGCTGCTTAAAAGAATTTCTGATGGATTTGGAGCCTCCAAATTATCTTCCAAAGGAAATATCAGGAGTGGCCAGTCTGGCCAATGAAATGTTGCAAGTTTCATAAAAATCACTAAAGCAGTTGGGAGGGTTGTAATGGTTTAGCTTGAAGAAAGCAGCACAGCAAACCTGAACTGTGGTATTACCATAGACAGCAGGAAGATTGTACACTGCATACTCCTAGGGGCATCCCAGCATAGTACTATGAAATGACCTTTGTCTCTGGAAAGCAGTCTTTCTTTCTTTTTTTTTTTTTTTTTTTTTTTTTGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCGAAAGCAGTCTTTCTAAGGAGTGGGATATCTTCTCTGTCAGAAAGCTCTTCTGAACAAATCTTGTATATCTGGATGTGACTGTTGGGGTCTTAGAAGGGCTGAGGACAGGAGAGAGTCTGAGGCTGAAGGACAGATTTTGTGTCAGGCCTTGTACTGTGTTCCCCCATAACTAGATATGAATGAATTTTAG
Seq C2 exon
GGGGAGCTGGAAAAGCAGCTTCTACAGGCAAACCCAATCCTGGAGGCTTTCGGCAATGCAAAAACTGTCAAGAATGACAACTCCTCCCGCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057880:ENSRNOT00000084608:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.114 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(14.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(13.0=100)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]