MmuINT1027562 @ mm10
Intron Retention
Gene
ENSMUSG00000036480 | Prss56
Description
protease, serine 56 [Source:MGI Symbol;Acc:MGI:1916703]
Coordinates
chr1:87184155-87184656:+
Coord C1 exon
chr1:87184155-87184262
Coord A exon
chr1:87184263-87184602
Coord C2 exon
chr1:87184603-87184656
Length
340 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGTA
5' ss Score
-0.35
3' ss Seq
AAAGGATTGTTTCTCAGTAGGAC
3' ss Score
3.37
Exon sequences
Seq C1 exon
TTTTATCTGCCCAGGGGACTCAGGCATTGCAGGCTGCCCAGAGGAGTGCCCAGTGGGCCATAAAGCGCGTGTTGATGGAGATCCAGCACAGACTACATGAATGCCAAG
Seq A exon
GTTGTACCAGAAGTGCTACCCCACCCAGCAGACTCACATTGGTACAGGGGACTCCTCCTTTTGTCCATGTCCAGCCCTTATTTTTAGGTTCCATCGTCCTTGGGGTCAGATTCTTTTTGAAGGTCCAAGTGGAAGGGGTATGCCAAACTTGAGACACAGCAGGGAGGAGGGGAGAGTGTGGGCTCAGGTGGTCACAGTTCATGGCTGCTCAAATAGTTCCATGTGCTAGAAGGCGGGCCAAGTGGAGAGTGGTTGAAAGATGAGGCCCAGCCCCCCCCCCCAATAAAGCGAAAGATCCGCAAGAGGGCGCAGCGAGGCTCAAAGGATTGTTTCTCAGTAG
Seq C2 exon
GACCTGGACGCCCTAGACCTCAAGCCCCCCTCCTCCAGGACCCACCGGAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036480:ENSMUST00000044533:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.081 A=NA C2=0.947
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types