Special

MmuINT1027562 @ mm10

Intron Retention

Gene
Description
protease, serine 56 [Source:MGI Symbol;Acc:MGI:1916703]
Coordinates
chr1:87184155-87184656:+
Coord C1 exon
chr1:87184155-87184262
Coord A exon
chr1:87184263-87184602
Coord C2 exon
chr1:87184603-87184656
Length
340 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGTA
5' ss Score
-0.35
3' ss Seq
AAAGGATTGTTTCTCAGTAGGAC
3' ss Score
3.37
Exon sequences
Seq C1 exon
TTTTATCTGCCCAGGGGACTCAGGCATTGCAGGCTGCCCAGAGGAGTGCCCAGTGGGCCATAAAGCGCGTGTTGATGGAGATCCAGCACAGACTACATGAATGCCAAG
Seq A exon
GTTGTACCAGAAGTGCTACCCCACCCAGCAGACTCACATTGGTACAGGGGACTCCTCCTTTTGTCCATGTCCAGCCCTTATTTTTAGGTTCCATCGTCCTTGGGGTCAGATTCTTTTTGAAGGTCCAAGTGGAAGGGGTATGCCAAACTTGAGACACAGCAGGGAGGAGGGGAGAGTGTGGGCTCAGGTGGTCACAGTTCATGGCTGCTCAAATAGTTCCATGTGCTAGAAGGCGGGCCAAGTGGAGAGTGGTTGAAAGATGAGGCCCAGCCCCCCCCCCCAATAAAGCGAAAGATCCGCAAGAGGGCGCAGCGAGGCTCAAAGGATTGTTTCTCAGTAG
Seq C2 exon
GACCTGGACGCCCTAGACCTCAAGCCCCCCTCCTCCAGGACCCACCGGAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036480:ENSMUST00000044533:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.081 A=NA C2=0.947
Domain overlap (PFAM):

C1:
NO
A:
NA
C2:
NO


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types